RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MMS19Q96T76 1030 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 RTP3Q9BQQ7 232 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 APOBEC3GQ9HC16 384 aaKnown RBP20.74■□□□□ 0.91
UPF1-209ENST00000600310 POLIQ9UNA4 740 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 HCFC2Q9Y5Z7 792 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 CDY1Q9Y6F8 540 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 TACC1O75410 805 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 P4HA1P13674 534 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 CETN1Q12798 172 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 SPOPLQ6IQ16 392 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 LILRA6Q6PI73 481 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 GLYCTKQ8IVS8 523 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.73■□□□□ 0.91
UPF1-209ENST00000600310 VN1R2Q8NFZ6 395 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 ELMO3Q96BJ8 720 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 PABPC5Q96DU9 382 aaKnown RBP20.73■□□□□ 0.91
UPF1-209ENST00000600310 FAXDC2Q96IV6 333 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 TUBGCP2Q9BSJ2 902 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 HSD3B7Q9H2F3 369 aa20.73■□□□□ 0.91
UPF1-209ENST00000600310 CDH23Q9H251 3354 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 LINC01565O15544 149 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 CLSTN1O94985 981 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 GLP2RO95838 553 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 GLUD1P00367 558 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 ZNF18P17022 549 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 WARSP23381 471 aaKnown RBP20.72■□□□□ 0.91
UPF1-209ENST00000600310 LHX1P48742 406 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 IQCB1Q15051 598 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 SKIV2LQ15477 1246 aaKnown RBP20.72■□□□□ 0.91
UPF1-209ENST00000600310 VWA3BQ502W6 1294 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 WDR44Q5JSH3 913 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 OSTM1Q86WC4 334 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 PALB2Q86YC2 1186 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 OR10T2Q8NGX3 314 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 KBTBD7Q8WVZ9 684 aa20.72■□□□□ 0.91
UPF1-209ENST00000600310 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.72■□□□□ 0.91
UPF1-209ENST00000600310 DDX43Q9NXZ2 648 aaKnown RBP20.72■□□□□ 0.91
UPF1-209ENST00000600310 TGM5O43548 720 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 PRKCSHP14314 528 aaPredicted RBP20.71■□□□□ 0.91
UPF1-209ENST00000600310 EPCAMP16422 314 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 ASPAP45381 313 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 RBM10P98175 930 aaKnown RBP20.71■□□□□ 0.91
UPF1-209ENST00000600310 ROR1Q01973 937 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 MIIPQ5JXC2 388 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 ZNF461Q8TAF7 563 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 LMO3Q8TAP4 145 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 CASP10Q92851 521 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 MRPL45Q9BRJ2 306 aaKnown RBP20.71■□□□□ 0.91
UPF1-209ENST00000600310 BCO2Q9BYV7 579 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 NIF3L1Q9GZT8 377 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 SMYD3Q9H7B4 428 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 CBX8Q9HC52 389 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 CLDND1Q9NY35 253 aa20.71■□□□□ 0.91
UPF1-209ENST00000600310 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.7■□□□□ 0.9
UPF1-209ENST00000600310 GTPBP10A4D1E9 387 aaKnown RBP20.7■□□□□ 0.9
UPF1-209ENST00000600310 BECN2A8MW95 431 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 ABLIM3O94929 683 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 SRGAP2BP0DMP2 458 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 ARPP19P56211 112 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 KRT31Q15323 416 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 LLGL2Q6P1M3 1020 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 LRSAM1Q6UWE0 723 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 EHBP1Q8NDI1 1231 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 HDAC7Q8WUI4 952 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 TMEM209Q96SK2 561 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 ACBD6Q9BR61 282 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 ZCWPW1Q9H0M4 648 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 SDCBP2Q9H190 292 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 NDST4Q9H3R1 872 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 CYP3A43Q9HB55 503 aa20.7■□□□□ 0.9
UPF1-209ENST00000600310 PRUNE2Q8WUY3 3088 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 WDR27A2RRH5 827 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 PCSK1P29120 753 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 GNL1P36915 607 aaPredicted RBP20.69■□□□□ 0.9
UPF1-209ENST00000600310 LTBRP36941 435 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 CDH8P55286 799 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 GPR17Q13304 367 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 TPGS2Q68CL5 300 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 SCARA5Q6ZMJ2 495 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 ANKRD20A12PQ8NF67 263 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 OR6B3Q8NGW1 331 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 TATDN2Q93075 761 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 SNX25Q9H3E2 840 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 PLEKHA4Q9H4M7 779 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 UBE2ZQ9H832 354 aaPredicted RBP20.69■□□□□ 0.9
UPF1-209ENST00000600310 TAB2Q9NYJ8 693 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 LIMA1Q9UHB6 759 aaKnown RBP20.69■□□□□ 0.9
UPF1-209ENST00000600310 DPP7Q9UHL4 492 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 FBXW11Q9UKB1 542 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 NME7Q9Y5B8 376 aa20.69■□□□□ 0.9
UPF1-209ENST00000600310 LRRC10BA6NIK2 292 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 TBX10O75333 385 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 WEE2P0C1S8 567 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 OR4Q2P0C623 313 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 CPB1P15086 417 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 CDK11BP21127 795 aaKnown RBP20.68■□□□□ 0.9
UPF1-209ENST00000600310 LMO2P25791 158 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 RAP1GAPP47736 663 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 ZNF445P59923 1031 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 TSPY1Q01534 308 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms