RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 SRFP11831 508 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 PTPN2P17706 415 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 ATF6P18850 670 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 ELF1P32519 619 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 TCF15Q12870 199 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 STXBP4Q6ZWJ1 553 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 LIMS2Q7Z4I7 341 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 USP37Q86T82 979 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 C12orf56Q8IXR9 622 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 PDCL2Q8N4E4 241 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 GPR152Q8TDT2 470 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 NXPE3Q969Y0 559 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 ZSWIM3Q96MP5 696 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 PKMYT1Q99640 499 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 PLA2G2FQ9BZM2 168 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 KCTD10Q9H3F6 313 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 ZNF334Q9HCZ1 680 aaPredicted RBP13.1□□□□□ -0.31
LIG1-217ENST00000599165 ITGA11Q9UKX5 1188 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 SLC27A5Q9Y2P5 690 aa13.1□□□□□ -0.31
LIG1-217ENST00000599165 MRPS23Q9Y3D9 190 aaKnown RBP13.1□□□□□ -0.31
LIG1-217ENST00000599165 NUP210Q8TEM1 1887 aaPredicted RBP13.1□□□□□ -0.31
LIG1-217ENST00000599165 F5P12259 2224 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 ZNF233A6NK53 670 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 PI15O43692 258 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 GJA1P17302 382 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 CYP2J2P51589 502 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 GPC5P78333 572 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 CYP24A1Q07973 514 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 SNRNP35Q16560 246 aaKnown RBP13.09□□□□□ -0.31
LIG1-217ENST00000599165 KNOP1Q1ED39 458 aaKnown RBP13.09□□□□□ -0.31
LIG1-217ENST00000599165 SV2CQ496J9 727 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 SUGP1Q8IWZ8 645 aaKnown RBP13.09□□□□□ -0.31
LIG1-217ENST00000599165 CEP57L1Q8IYX8 460 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 CSGALNACT2Q8N6G5 542 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 LRRC52Q8N7C0 313 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 SHKBP1Q8TBC3 707 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 NOC3LQ8WTT2 800 aaKnown RBP13.09□□□□□ -0.31
LIG1-217ENST00000599165 ZNF516Q92618 1163 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 MCRS1Q96EZ8 462 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 KXD1Q9BQD3 176 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 MKNK1Q9BUB5 465 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 SLC2A4RGQ9NR83 387 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 DMAC2Q9NW81 257 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 GDAP2Q9NXN4 497 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 WNT16Q9UBV4 365 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 NME7Q9Y5B8 376 aa13.09□□□□□ -0.31
LIG1-217ENST00000599165 KIF26AQ9ULI4 1882 aaPredicted RBP13.08□□□□□ -0.32
LIG1-217ENST00000599165 SHISA7A6NL88 538 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 GABRDO14764 452 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 MICAL2O94851 1124 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 CST3P01034 146 aaPredicted RBP13.08□□□□□ -0.32
LIG1-217ENST00000599165 PNPLA4P41247 253 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SYKP43405 635 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 CASP4P49662 377 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SNRPFP62306 86 aaKnown RBP13.08□□□□□ -0.32
LIG1-217ENST00000599165 DPYDQ12882 1025 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 PSMD6Q15008 389 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SOWAHAQ2M3V2 549 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SLC39A12Q504Y0 691 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 FAM78AQ5JUQ0 283 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 TANGO2Q6ICL3 276 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 KRBA2Q6ZNG9 492 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 WDR49Q8IV35 697 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SIX5Q8N196 739 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 FSIP1Q8NA03 581 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 XXYLT1Q8NBI6 393 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 RDH13Q8NBN7 331 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 TMEM174Q8WUU8 243 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 KBTBD7Q8WVZ9 684 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 ZNF560Q96MR9 790 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 SCAND2PQ9GZW5 306 aaPredicted RBP13.08□□□□□ -0.32
LIG1-217ENST00000599165 KCNH6Q9H252 994 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 HSFX1Q9UBD0 423 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 USP25Q9UHP3 1055 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 DSEQ9UL01 958 aa13.08□□□□□ -0.32
LIG1-217ENST00000599165 MIA3Q5JRA6 1907 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 TICRRQ7Z2Z1 1910 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 ANAPC1Q9H1A4 1944 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 CACNA1IQ9P0X4 2223 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 RPN1P04843 607 aaKnown RBP13.07□□□□□ -0.32
LIG1-217ENST00000599165 TMEM191BP0C7N4 346 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 ACAT1P24752 427 aaKnown RBP13.07□□□□□ -0.32
LIG1-217ENST00000599165 RBP5P82980 135 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 NHLH1Q02575 133 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 BFSP1Q12934 665 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 TEAD2Q15562 447 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 STXBP5Q5T5C0 1151 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 ASTLQ6HA08 431 aaPredicted RBP13.07□□□□□ -0.32
LIG1-217ENST00000599165 GAREM2Q75VX8 874 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 PDZD4Q76G19 769 aaPredicted RBP13.07□□□□□ -0.32
LIG1-217ENST00000599165 TRAPPC11Q7Z392 1133 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 CACTINQ8WUQ7 758 aaKnown RBP13.07□□□□□ -0.32
LIG1-217ENST00000599165 PSMG2Q969U7 264 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 RSPRY1Q96DX4 576 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 PHOX2BQ99453 314 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 CGRRF1Q99675 332 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 LPIN3Q9BQK8 851 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 IL21Q9HBE4 155 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 KIAA1586Q9HCI6 787 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 GDE1Q9NZC3 331 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms