RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TIGD1Q96MW7 591 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 GSDMAQ96QA5 445 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 CGRRF1Q99675 332 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 SEPT5Q99719 369 aaPredicted RBP11.7□□□□□ -0.54
CLIP3-203ENST00000586457 SNX25Q9H3E2 840 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 ASAH2Q9NR71 780 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 CDH7Q9ULB5 785 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 SLC27A5Q9Y2P5 690 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 HCN4Q9Y3Q4 1203 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 PLXNA3P51805 1871 aa11.7□□□□□ -0.54
CLIP3-203ENST00000586457 SEC24AO95486 1093 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 FGF19O95750 216 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 ASGR2P07307 311 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 POU2F2P09086 479 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 MYL4P12829 197 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 LAMP2P13473 410 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 P4HA1P13674 534 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 NR2F2P24468 414 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 PCSK1P29120 753 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 NTHL1P78549 312 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 SIGLEC14Q08ET2 396 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 ADAM9Q13443 819 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 NFE2Q16621 373 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 DPH6Q7L8W6 267 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 SLC9A9Q8IVB4 645 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 ADGRF2Q8IZF7 708 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 GUF1Q8N442 669 aaKnown RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 TOP6BLQ8N6T0 577 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 LEMD2Q8NC56 503 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 OR5B17Q8NGF7 314 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 SYAP1Q96A49 352 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 LRFN3Q9BTN0 628 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 DNAI2Q9GZS0 605 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 SLITRK6Q9H5Y7 841 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 KCNK12Q9HB15 430 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 HCFC1R1Q9NWW0 138 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 GDAP2Q9NXN4 497 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 DDX43Q9NXZ2 648 aaKnown RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 ABI2Q9NYB9 513 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 DNMT3BQ9UBC3 853 aaKnown RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 ASB3Q9Y575 518 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 PCDHB5Q9Y5E4 795 aa11.69□□□□□ -0.54
CLIP3-203ENST00000586457 PDCD11Q14690 1871 aaKnown RBP11.69□□□□□ -0.54
CLIP3-203ENST00000586457 TCHHQ07283 1943 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 MTCL1Q9Y4B5 1905 aaKnown RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 NCOR1O75376 2440 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 TMEM221A6NGB7 291 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 M0R296 226 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 CETN3O15182 167 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 RHOP08100 348 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ATICP31939 592 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 PSMC2P35998 433 aaKnown RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 MAPRE1Q15691 268 aaKnown RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 WDR72Q3MJ13 1102 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ZNF658Q5TYW1 1059 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 CENPPQ6IPU0 288 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 SPATA2LQ8IUW3 424 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 PDCL2Q8N4E4 241 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ATAD1Q8NBU5 361 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 SPPL2BQ8TCT7 592 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ING5Q8WYH8 240 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 FGF13Q92913 245 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 MCRS1Q96EZ8 462 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 GCNAQ96QF7 691 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 MYADMQ96S97 322 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ACBD6Q9BR61 282 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 IMPG2Q9BZV3 1241 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 ZCWPW1Q9H0M4 648 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 KCTD10Q9H3F6 313 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 GDE1Q9NZC3 331 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 EPS15L1Q9UBC2 864 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 HSFX1Q9UBD0 423 aa11.68□□□□□ -0.54
CLIP3-203ENST00000586457 NXF1Q9UBU9 619 aaKnown RBP11.68□□□□□ -0.54
CLIP3-203ENST00000586457 SPTBN5Q9NRC6 3674 aaKnown RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 VWA8A3KMH1 1905 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 MTMR11A4FU01 709 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 STX10O60499 249 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 EPB41P11171 864 aaKnown RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 COL9A1P20849 921 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 GNL1P36915 607 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 PPP1R2P41236 205 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 VAMP7P51809 220 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 WNT7BP56706 349 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 RPL10AP62906 217 aaKnown RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 SNW1Q13573 536 aaKnown RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 SGSM1Q2NKQ1 1148 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 ARHGAP15Q53QZ3 475 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 C4orf50Q6ZRC1 276 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 INTS8Q75QN2 995 aaKnown RBP11.67□□□□□ -0.54
CLIP3-203ENST00000586457 FAM186BQ8IYM0 893 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 OR6B3Q8NGW1 331 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 SPATA18Q8TC71 538 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 PARD3BQ8TEW8 1205 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 GPR88Q9GZN0 384 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 TRAF3IP3Q9Y228 551 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 YIPF1Q9Y548 306 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 C5orf42Q9H799 3197 aa11.67□□□□□ -0.54
CLIP3-203ENST00000586457 PSMA7O14818 248 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 IKBKBO14920 756 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 PAPLNO95428 1278 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms