RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TFAP2BQ92481 460 aa15.06■□□□□ 0
LIG3-205ENST00000585941 TMEM176AQ96HP8 235 aa15.06■□□□□ 0
LIG3-205ENST00000585941 BTBD6Q96KE9 485 aa15.06■□□□□ 0
LIG3-205ENST00000585941 CELF4Q9BZC1 486 aaKnown RBP15.06■□□□□ 0
LIG3-205ENST00000585941 DNAI2Q9GZS0 605 aa15.06■□□□□ 0
LIG3-205ENST00000585941 EPB41L5Q9HCM4 733 aa15.06■□□□□ 0
LIG3-205ENST00000585941 BARX2Q9UMQ3 279 aaPredicted RBP15.06■□□□□ 0
LIG3-205ENST00000585941 UBQLN1Q9UMX0 589 aaKnown RBP15.06■□□□□ 0
LIG3-205ENST00000585941 PSTPIP1O43586 416 aa15.06■□□□□ 0
LIG3-205ENST00000585941 HMGCRP04035 888 aa15.06■□□□□ 0
LIG3-205ENST00000585941 GLI1P08151 1106 aa15.06■□□□□ 0
LIG3-205ENST00000585941 VDRP11473 427 aa15.06■□□□□ 0
LIG3-205ENST00000585941 PTPN11Q06124 597 aaPredicted RBP15.06■□□□□ 0
LIG3-205ENST00000585941 DHX34Q14147 1143 aaKnown RBP15.06■□□□□ 0
LIG3-205ENST00000585941 SLC4A11Q8NBS3 891 aa15.06■□□□□ 0
LIG3-205ENST00000585941 CAVIN3Q969G5 261 aa15.06■□□□□ 0
LIG3-205ENST00000585941 ZIC5Q96T25 663 aa15.06■□□□□ 0
LIG3-205ENST00000585941 EIF2AQ9BY44 585 aaKnown RBP15.06■□□□□ 0
LIG3-205ENST00000585941 SMYD3Q9H7B4 428 aa15.06■□□□□ 0
LIG3-205ENST00000585941 WDR35Q9P2L0 1181 aa15.06■□□□□ 0
LIG3-205ENST00000585941 GTF2IRD1Q9UHL9 959 aa15.06■□□□□ 0
LIG3-205ENST00000585941 GABRQQ9UN88 632 aa15.06■□□□□ 0
LIG3-205ENST00000585941 FAM187AA6NFU0 413 aa15.05■□□□□ -0
LIG3-205ENST00000585941 KIF3CO14782 793 aa15.05■□□□□ -0
LIG3-205ENST00000585941 CHRNA3P32297 505 aa15.05■□□□□ -0
LIG3-205ENST00000585941 RAP1GAPP47736 663 aa15.05■□□□□ -0
LIG3-205ENST00000585941 GSCP56915 257 aaPredicted RBP15.05■□□□□ -0
LIG3-205ENST00000585941 MRPS6P82932 125 aaKnown RBP15.05■□□□□ -0
LIG3-205ENST00000585941 CBX1P83916 185 aa15.05■□□□□ -0
LIG3-205ENST00000585941 ZNF200P98182 395 aaPredicted RBP15.05■□□□□ -0
LIG3-205ENST00000585941 ZNF211Q13398 564 aaPredicted RBP15.05■□□□□ -0
LIG3-205ENST00000585941 SMC1AQ14683 1233 aaKnown RBP15.05■□□□□ -0
LIG3-205ENST00000585941 CNGA2Q16280 664 aa15.05■□□□□ -0
LIG3-205ENST00000585941 CYP4F22Q6NT55 531 aa15.05■□□□□ -0
LIG3-205ENST00000585941 DNAJC24Q6P3W2 148 aa15.05■□□□□ -0
LIG3-205ENST00000585941 RHOT1Q8IXI2 618 aa15.05■□□□□ -0
LIG3-205ENST00000585941 C3orf20Q8ND61 904 aa15.05■□□□□ -0
LIG3-205ENST00000585941 C1orf131Q8NDD1 294 aaKnown RBP15.05■□□□□ -0
LIG3-205ENST00000585941 WHAMMQ8TF30 809 aa15.05■□□□□ -0
LIG3-205ENST00000585941 UBXN6Q9BZV1 441 aa15.05■□□□□ -0
LIG3-205ENST00000585941 MIS12Q9H081 205 aa15.05■□□□□ -0
LIG3-205ENST00000585941 DDX47Q9H0S4 455 aaKnown RBP15.05■□□□□ -0
LIG3-205ENST00000585941 RAB17Q9H0T7 212 aa15.05■□□□□ -0
LIG3-205ENST00000585941 SDCBP2Q9H190 292 aa15.05■□□□□ -0
LIG3-205ENST00000585941 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.05■□□□□ -0
LIG3-205ENST00000585941 TMEM191CA6NGB0 347 aa15.04■□□□□ -0
LIG3-205ENST00000585941 BHMG1C9JSJ3 638 aaPredicted RBP15.04■□□□□ -0
LIG3-205ENST00000585941 PHF2O75151 1096 aa15.04■□□□□ -0
LIG3-205ENST00000585941 RECQL4O94761 1208 aa15.04■□□□□ -0
LIG3-205ENST00000585941 MYBL2P10244 700 aa15.04■□□□□ -0
LIG3-205ENST00000585941 PYGMP11217 842 aa15.04■□□□□ -0
LIG3-205ENST00000585941 ITGA4P13612 1032 aa15.04■□□□□ -0
LIG3-205ENST00000585941 KCNE1P15382 129 aa15.04■□□□□ -0
LIG3-205ENST00000585941 PNPLA4P41247 253 aa15.04■□□□□ -0
LIG3-205ENST00000585941 MARCKSL1P49006 195 aa15.04■□□□□ -0
LIG3-205ENST00000585941 CDH8P55286 799 aa15.04■□□□□ -0
LIG3-205ENST00000585941 NBPF20Q3BBV1 942 aa15.04■□□□□ -0
LIG3-205ENST00000585941 SGO2Q562F6 1265 aa15.04■□□□□ -0
LIG3-205ENST00000585941 XKR4Q5GH76 650 aa15.04■□□□□ -0
LIG3-205ENST00000585941 RPAINQ86UA6 219 aa15.04■□□□□ -0
LIG3-205ENST00000585941 SESTD1Q86VW0 696 aa15.04■□□□□ -0
LIG3-205ENST00000585941 SLC13A5Q86YT5 568 aaPredicted RBP15.04■□□□□ -0
LIG3-205ENST00000585941 TMEM40Q8WWA1 233 aa15.04■□□□□ -0
LIG3-205ENST00000585941 NT5C1AQ9BXI3 368 aa15.04■□□□□ -0
LIG3-205ENST00000585941 ARHGAP39Q9C0H5 1083 aa15.04■□□□□ -0
LIG3-205ENST00000585941 ELOVL4Q9GZR5 314 aa15.04■□□□□ -0
LIG3-205ENST00000585941 UTP11Q9Y3A2 253 aaKnown RBP15.04■□□□□ -0
LIG3-205ENST00000585941 TCRBV5S1A1TA0A578 114 aa15.03■□□□□ -0
LIG3-205ENST00000585941 MYADML2A6NDP7 307 aa15.03■□□□□ -0
LIG3-205ENST00000585941 CYP3A5P20815 502 aa15.03■□□□□ -0
LIG3-205ENST00000585941 HOXD10P28358 340 aa15.03■□□□□ -0
LIG3-205ENST00000585941 CETN2P41208 172 aa15.03■□□□□ -0
LIG3-205ENST00000585941 SP3Q02447 781 aa15.03■□□□□ -0
LIG3-205ENST00000585941 PRKCZQ05513 592 aa15.03■□□□□ -0
LIG3-205ENST00000585941 PIGHQ14442 188 aaPredicted RBP15.03■□□□□ -0
LIG3-205ENST00000585941 CYP1B1Q16678 543 aa15.03■□□□□ -0
LIG3-205ENST00000585941 DCUN1D2Q6PH85 259 aa15.03■□□□□ -0
LIG3-205ENST00000585941 HACE1Q8IYU2 909 aa15.03■□□□□ -0
LIG3-205ENST00000585941 WDTC1Q8N5D0 677 aa15.03■□□□□ -0
LIG3-205ENST00000585941 ZNF560Q96MR9 790 aa15.03■□□□□ -0
LIG3-205ENST00000585941 NXF3Q9H4D5 531 aaKnown RBP15.03■□□□□ -0
LIG3-205ENST00000585941 MED4Q9NPJ6 270 aa15.03■□□□□ -0
LIG3-205ENST00000585941 FAM114A2Q9NRY5 505 aa15.03■□□□□ -0
LIG3-205ENST00000585941 AMACRQ9UHK6 382 aa15.03■□□□□ -0
LIG3-205ENST00000585941 RASAL2Q9UJF2 1139 aa15.03■□□□□ -0
LIG3-205ENST00000585941 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.03■□□□□ -0
LIG3-205ENST00000585941 TRPV2Q9Y5S1 764 aa15.03■□□□□ -0
LIG3-205ENST00000585941 FSCN2O14926 492 aa15.03■□□□□ -0
LIG3-205ENST00000585941 CST5P28325 142 aaPredicted RBP15.03■□□□□ -0
LIG3-205ENST00000585941 SSTR3P32745 418 aaPredicted RBP15.03■□□□□ -0
LIG3-205ENST00000585941 GUCY2FP51841 1108 aa15.03■□□□□ -0
LIG3-205ENST00000585941 NDST1P52848 882 aa15.03■□□□□ -0
LIG3-205ENST00000585941 MRPS25P82663 173 aaKnown RBP15.03■□□□□ -0
LIG3-205ENST00000585941 CACNB2Q08289 660 aaPredicted RBP15.03■□□□□ -0
LIG3-205ENST00000585941 ZNF268Q14587 947 aaPredicted RBP15.03■□□□□ -0
LIG3-205ENST00000585941 C2CD6Q53TS8 623 aa15.03■□□□□ -0
LIG3-205ENST00000585941 HSP90B2PQ58FF3 399 aa15.03■□□□□ -0
LIG3-205ENST00000585941 UBXN11Q5T124 520 aa15.03■□□□□ -0
LIG3-205ENST00000585941 LRRC38Q5VT99 294 aa15.03■□□□□ -0
LIG3-205ENST00000585941 DENND1BQ6P3S1 775 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms