RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 HHIPQ96QV1 700 aa13.87□□□□□ -0.19
SS18-219ENST00000581570 FAM83CQ9BQN1 747 aa13.87□□□□□ -0.19
SS18-219ENST00000581570 TMEM121BQ9BXQ6 578 aaPredicted RBP13.87□□□□□ -0.19
SS18-219ENST00000581570 SMG9Q9H0W8 520 aaKnown RBP13.87□□□□□ -0.19
SS18-219ENST00000581570 ARHGAP28Q9P2N2 729 aa13.87□□□□□ -0.19
SS18-219ENST00000581570 RBM19Q9Y4C8 960 aaKnown RBP13.87□□□□□ -0.19
SS18-219ENST00000581570 FRYQ5TBA9 3013 aa13.87□□□□□ -0.19
SS18-219ENST00000581570 SRRM3A6NNA2 597 aaPredicted RBP13.86□□□□□ -0.19
SS18-219ENST00000581570 DCLK1O15075 740 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 EGFP01133 1207 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 OR52Z1P0C646 297 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 CEACAM1P13688 526 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 CDC25CP30307 473 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 LRPAP1P30533 357 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 AARSP49588 968 aaKnown RBP eCLIP13.86□□□□□ -0.19
SS18-219ENST00000581570 AMPD2Q01433 879 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 SPAG1Q07617 926 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 KARSQ15046 597 aaKnown RBP13.86□□□□□ -0.19
SS18-219ENST00000581570 ZNF174Q15697 407 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 OVOS1Q6IE37 1185 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 ARMCX5Q6P1M9 558 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 NECAB1Q8N987 351 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 GCNAQ96QF7 691 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 SLC46A2Q9BY10 475 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 EBF3Q9H4W6 596 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 HPS4Q9NQG7 708 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 KIAA1024Q9UPX6 916 aa13.86□□□□□ -0.19
SS18-219ENST00000581570 PDCD11Q14690 1871 aaKnown RBP13.86□□□□□ -0.19
SS18-219ENST00000581570 FAM208BQ5VWN6 2430 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 TRIP11Q15643 1979 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 OTOL1A6NHN0 477 aaPredicted RBP13.85□□□□□ -0.19
SS18-219ENST00000581570 HIP1RO75146 1068 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 TOM1L1O75674 476 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 CSRP1P21291 193 aaKnown RBP13.85□□□□□ -0.19
SS18-219ENST00000581570 DRD1P21728 446 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 TUFMP49411 452 aaKnown RBP13.85□□□□□ -0.19
SS18-219ENST00000581570 GALK1P51570 392 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 NOLC1Q14978 699 aaKnown RBP eCLIP13.85□□□□□ -0.19
SS18-219ENST00000581570 VEPH1Q14D04 833 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 TRIM68Q6AZZ1 485 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 LRSAM1Q6UWE0 723 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 CMTM8Q8IZV2 173 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 DAW1Q8N136 415 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 GATA6Q92908 595 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 CHFRQ96EP1 664 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 KIF12Q96FN5 646 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 LPIN3Q9BQK8 851 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 SCNM1Q9BWG6 230 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 PLEKHA5Q9HAU0 1116 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 IL21Q9HBE4 155 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 FBRSL1Q9HCM7 1045 aaKnown RBP13.85□□□□□ -0.19
SS18-219ENST00000581570 TMEM9BQ9NQ34 198 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 DDX19AQ9NUU7 478 aaKnown RBP13.85□□□□□ -0.19
SS18-219ENST00000581570 ANKFY1Q9P2R3 1169 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 HSFX1Q9UBD0 423 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 ATRXP46100 2492 aa13.85□□□□□ -0.19
SS18-219ENST00000581570 LNP1A1A4G5 178 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 KHNYNO15037 678 aaKnown RBP13.84□□□□□ -0.19
SS18-219ENST00000581570 SLC16A4O15374 487 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 LARGE1O95461 756 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 APBB3O95704 486 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 CXCL8P10145 99 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 TYMPP19971 482 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 CYP3A5P20815 502 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 GBP1P32455 592 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 STRN3Q13033 797 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 ZBTB6Q15916 424 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 TAF12Q16514 161 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 MGAT5BQ3V5L5 792 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 FBXO43Q4G163 708 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 SYT13Q7L8C5 426 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 RPLP0P6Q8NHW5 317 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 EXOC4Q96A65 974 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 DRC1Q96MC2 740 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 SEPT5Q99719 369 aaPredicted RBP13.84□□□□□ -0.19
SS18-219ENST00000581570 EBF1Q9UH73 591 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 ZMYM5Q9UJ78 669 aa13.84□□□□□ -0.19
SS18-219ENST00000581570 UBQLN1Q9UMX0 589 aaKnown RBP13.84□□□□□ -0.19
SS18-219ENST00000581570 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.84□□□□□ -0.19
SS18-219ENST00000581570 SOBPA7XYQ1 873 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 SFI1A8K8P3 1242 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 CLDN3O15551 220 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 CLTAP09496 248 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 ARSAP15289 507 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 AVPR1AP37288 418 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 MATR3P43243 847 aaKnown RBP eCLIP13.83□□□□□ -0.2
SS18-219ENST00000581570 DGKEP52429 567 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 RING1Q06587 406 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 BFSP1Q12934 665 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 ORC2Q13416 577 aaPredicted RBP13.83□□□□□ -0.2
SS18-219ENST00000581570 DMC1Q14565 340 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 ANKRD1Q15327 319 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 CC2D1AQ6P1N0 951 aaPredicted RBP13.83□□□□□ -0.2
SS18-219ENST00000581570 NSUN7Q8NE18 718 aaKnown RBP13.83□□□□□ -0.2
SS18-219ENST00000581570 GIPC2Q8TF65 315 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 ZCCHC14Q8WYQ9 949 aaKnown RBP13.83□□□□□ -0.2
SS18-219ENST00000581570 P2RY13Q9BPV8 354 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 C17orf75Q9HAS0 396 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 LRWD1Q9UFC0 647 aa13.83□□□□□ -0.2
SS18-219ENST00000581570 LHX6Q9UPM6 363 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms