RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 VSX1Q9NZR4 365 aaPredicted RBP8.02□□□□□ -1.13
SS18-214ENST00000580003 KLHL42Q9P2K6 505 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 A0A088AWK7 358 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 GOLGA6CA6NDK9 693 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 GOLGA6BA6NDN3 693 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 M0QYG6 137 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 GOLGA6DP0CG33 693 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 MYBP10242 640 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 SOX8P57073 446 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 ARHGAP29Q52LW3 1261 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 EMC10Q5UCC4 262 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 ADGRG5Q8IZF4 528 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 SLC44A3Q8N4M1 653 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 PCSK9Q8NBP7 692 aaKnown RBP8.01□□□□□ -1.13
SS18-214ENST00000580003 LINC00476Q8WZB0 136 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 C1orf112Q9NSG2 853 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 GOLGA6AQ9NYA3 693 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 STAP2Q9UGK3 403 aa8.01□□□□□ -1.13
SS18-214ENST00000580003 VPS4BO75351 444 aa8□□□□□ -1.13
SS18-214ENST00000580003 KIF20AO95235 890 aa8□□□□□ -1.13
SS18-214ENST00000580003 HDCP19113 662 aa8□□□□□ -1.13
SS18-214ENST00000580003 MC2RQ01718 297 aa8□□□□□ -1.13
SS18-214ENST00000580003 MPP3Q13368 585 aa8□□□□□ -1.13
SS18-214ENST00000580003 HLXQ14774 488 aaPredicted RBP8□□□□□ -1.13
SS18-214ENST00000580003 POC1BQ8TC44 478 aa8□□□□□ -1.13
SS18-214ENST00000580003 SSH3Q8TE77 659 aa8□□□□□ -1.13
SS18-214ENST00000580003 LRIG1Q96JA1 1093 aa8□□□□□ -1.13
SS18-214ENST00000580003 LRFN3Q9BTN0 628 aa8□□□□□ -1.13
SS18-214ENST00000580003 AGAP1Q9UPQ3 857 aa8□□□□□ -1.13
SS18-214ENST00000580003 DMRT1Q9Y5R6 373 aa8□□□□□ -1.13
SS18-214ENST00000580003 TUSC2O75896 110 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 SOAT2O75908 522 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 SEC24CP53992 1094 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 ANO6Q4KMQ2 910 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 Q6ZNX1 250 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 MICALCLQ6ZW33 695 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 LNX2Q8N448 690 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 PSD4Q8NDX1 1056 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 AIFM2Q9BRQ8 373 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 KCTD5Q9NXV2 234 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 ETAA1Q9NY74 926 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 EPN1Q9Y6I3 576 aaPredicted RBP7.99□□□□□ -1.13
SS18-214ENST00000580003 MAST3O60307 1309 aa7.99□□□□□ -1.13
SS18-214ENST00000580003 MARCH6O60337 910 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 ESRRBO95718 433 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 NPTX2P47972 431 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 GPSM2P81274 684 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 SF3B3Q15393 1217 aaKnown RBP7.98□□□□□ -1.13
SS18-214ENST00000580003 FAM160B1Q5W0V3 765 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 OVCH2Q7RTZ1 564 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 FAM46DQ8NEK8 389 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 TSR2Q969E8 191 aaKnown RBP7.98□□□□□ -1.13
SS18-214ENST00000580003 B3GNT5Q9BYG0 378 aa7.98□□□□□ -1.13
SS18-214ENST00000580003 PIH1D1Q9NWS0 290 aaKnown RBP7.98□□□□□ -1.13
SS18-214ENST00000580003 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 A0A1W2PPL8 197 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 F5H697 171 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 PEX1O43933 1283 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 SRGNP10124 158 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 CHRM3P20309 590 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 ITGALP20701 1170 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 GATA3P23771 443 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 AGFG1P52594 562 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 PURAQ00577 322 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 TCF15Q12870 199 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 GFOD2Q3B7J2 385 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 AMOTQ4VCS5 1084 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 TAF2Q6P1X5 1199 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 NPNTQ6UXI9 565 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 WDR75Q8IWA0 830 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 CELF5Q8N6W0 485 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 SLC9A6Q92581 669 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 PUS7Q96PZ0 661 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 TMEM60Q9H2L4 133 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 FAM204AQ9H8W3 233 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 MRPS18AQ9NVS2 196 aaKnown RBP7.97□□□□□ -1.13
SS18-214ENST00000580003 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.97□□□□□ -1.13
SS18-214ENST00000580003 RAD54BQ9Y620 910 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.97□□□□□ -1.139e-6■■■■□ 20.1
SS18-214ENST00000580003 SPATA31A3Q5VYP0 1347 aa7.97□□□□□ -1.13
SS18-214ENST00000580003 A0A0B4J269 797 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 FAM227AF5H4B4 570 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 TRIAP1O43715 76 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 UNC5CO95185 931 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 PIM1P11309 404 aaPredicted RBP7.96□□□□□ -1.14
SS18-214ENST00000580003 NDUFV1P49821 464 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 TUBB3Q13509 450 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 TMPRSS9Q7Z410 1059 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 PPP1R32Q7Z5V6 425 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 FMNL3Q8IVF7 1028 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 SLC30A5Q8TAD4 765 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 LRIT1Q9P2V4 623 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 PLEKHM1Q9Y4G2 1056 aa7.96□□□□□ -1.14
SS18-214ENST00000580003 CAPN8A6NHC0 703 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 VSTM5A8MXK1 200 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 GRPP07492 148 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 ATF3P18847 181 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 PROZP22891 400 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 MPLP40238 635 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 MRPS35P82673 323 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms