RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 KXD1Q9BQD3 176 aa15.05■□□□□ -0
CLN3-235ENST00000568497 PRKD2Q9BZL6 878 aa15.05■□□□□ -0
CLN3-235ENST00000568497 LRRC27Q9C0I9 530 aa15.05■□□□□ -0
CLN3-235ENST00000568497 PLEKHA4Q9H4M7 779 aa15.05■□□□□ -0
CLN3-235ENST00000568497 MAGEF1Q9HAY2 307 aa15.05■□□□□ -0
CLN3-235ENST00000568497 ZDHHC7Q9NXF8 308 aa15.05■□□□□ -0
CLN3-235ENST00000568497 PDCD11Q14690 1871 aaKnown RBP15.05■□□□□ -0
CLN3-235ENST00000568497 MTCL1Q9Y4B5 1905 aaKnown RBP15.05■□□□□ -0
CLN3-235ENST00000568497 ANKRD11Q6UB99 2663 aaPredicted RBP15.04■□□□□ -0
CLN3-235ENST00000568497 VWA8A3KMH1 1905 aa15.04■□□□□ -0
CLN3-235ENST00000568497 PTPRJQ12913 1337 aa15.04■□□□□ -0
CLN3-235ENST00000568497 TTC26A0AVF1 554 aa15.04■□□□□ -0
CLN3-235ENST00000568497 BIN1O00499 593 aa15.04■□□□□ -0
CLN3-235ENST00000568497 ADAM12O43184 909 aa15.04■□□□□ -0
CLN3-235ENST00000568497 B3GAT3O94766 335 aa15.04■□□□□ -0
CLN3-235ENST00000568497 NRLP54845 237 aa15.04■□□□□ -0
CLN3-235ENST00000568497 SHC2P98077 582 aa15.04■□□□□ -0
CLN3-235ENST00000568497 FAM160A1Q05DH4 1040 aa15.04■□□□□ -0
CLN3-235ENST00000568497 PPP2R5DQ14738 602 aa15.04■□□□□ -0
CLN3-235ENST00000568497 CSRP2Q16527 193 aa15.04■□□□□ -0
CLN3-235ENST00000568497 CAMK4Q16566 473 aa15.04■□□□□ -0
CLN3-235ENST00000568497 RTP2Q5QGT7 225 aa15.04■□□□□ -0
CLN3-235ENST00000568497 FAM171A1Q5VUB5 890 aa15.04■□□□□ -0
CLN3-235ENST00000568497 ARMCX5Q6P1M9 558 aa15.04■□□□□ -0
CLN3-235ENST00000568497 CELF5Q8N6W0 485 aaKnown RBP15.04■□□□□ -0
CLN3-235ENST00000568497 CLDN23Q96B33 292 aa15.04■□□□□ -0
CLN3-235ENST00000568497 NELL2Q99435 816 aa15.04■□□□□ -0
CLN3-235ENST00000568497 COLEC11Q9BWP8 271 aa15.04■□□□□ -0
CLN3-235ENST00000568497 AGPAT3Q9NRZ7 376 aa15.04■□□□□ -0
CLN3-235ENST00000568497 TOPORSQ9NS56 1045 aaPredicted RBP15.04■□□□□ -0
CLN3-235ENST00000568497 CNTN3Q9P232 1028 aa15.04■□□□□ -0
CLN3-235ENST00000568497 KCNG1Q9UIX4 513 aa15.04■□□□□ -0
CLN3-235ENST00000568497 CDH7Q9ULB5 785 aa15.04■□□□□ -0
CLN3-235ENST00000568497 ZMIZ1Q9ULJ6 1067 aa15.04■□□□□ -0
CLN3-235ENST00000568497 MRPS17Q9Y2R5 130 aaKnown RBP15.04■□□□□ -0
CLN3-235ENST00000568497 STYXL1Q9Y6J8 313 aa15.04■□□□□ -0
CLN3-235ENST00000568497 PVALEFA0A1B0GWK0 134 aa15.03■□□□□ -0
CLN3-235ENST00000568497 PODXLO00592 558 aa15.03■□□□□ -0
CLN3-235ENST00000568497 TGM5O43548 720 aa15.03■□□□□ -0
CLN3-235ENST00000568497 EFEMP2O95967 443 aa15.03■□□□□ -0
CLN3-235ENST00000568497 RPS9P46781 194 aaKnown RBP15.03■□□□□ -0
CLN3-235ENST00000568497 CASP4P49662 377 aa15.03■□□□□ -0
CLN3-235ENST00000568497 PPP2R3AQ06190 1150 aa15.03■□□□□ -0
CLN3-235ENST00000568497 SIM2Q14190 667 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 AASDHQ4L235 1098 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 ZNF852Q6ZMS4 543 aa15.03■□□□□ -0
CLN3-235ENST00000568497 APBB1IPQ7Z5R6 666 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 GRASPQ7Z6J2 395 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 RNF168Q8IYW5 571 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 KCNN1Q92952 543 aa15.03■□□□□ -0
CLN3-235ENST00000568497 HVCN1Q96D96 273 aa15.03■□□□□ -0
CLN3-235ENST00000568497 PDE11AQ9HCR9 933 aa15.03■□□□□ -0
CLN3-235ENST00000568497 HSPBP1Q9NZL4 362 aa15.03■□□□□ -0
CLN3-235ENST00000568497 USP25Q9UHP3 1055 aa15.03■□□□□ -0
CLN3-235ENST00000568497 ADAM28Q9UKQ2 775 aa15.03■□□□□ -0
CLN3-235ENST00000568497 NDRG2Q9UN36 371 aaKnown RBP15.03■□□□□ -0
CLN3-235ENST00000568497 EXOC7Q9UPT5 735 aa15.03■□□□□ -0
CLN3-235ENST00000568497 TIMM13Q9Y5L4 95 aaPredicted RBP15.03■□□□□ -0
CLN3-235ENST00000568497 ZFYVE26Q68DK2 2539 aa15.03■□□□□ -0
CLN3-235ENST00000568497 SCN1AP35498 2009 aa15.02■□□□□ -0
CLN3-235ENST00000568497 KCNE1P15382 129 aa15.02■□□□□ -0
CLN3-235ENST00000568497 TKTP29401 623 aaKnown RBP15.02■□□□□ -0
CLN3-235ENST00000568497 UPP1Q16831 310 aa15.02■□□□□ -0
CLN3-235ENST00000568497 PYM1Q9BRP8 204 aaKnown RBP15.02■□□□□ -0
CLN3-235ENST00000568497 POLIQ9UNA4 740 aa15.02■□□□□ -0
CLN3-235ENST00000568497 PCDHA5Q9Y5H7 936 aa15.02■□□□□ -0
CLN3-235ENST00000568497 DOCK6Q96HP0 2047 aa15.02□□□□□ -0.01
CLN3-235ENST00000568497 C1QTNF9BB2RNN3 333 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 EIF3DO15371 548 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-235ENST00000568497 FOXD2O60548 495 aaPredicted RBP15.01□□□□□ -0.01
CLN3-235ENST00000568497 C1QTNF9P0C862 333 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 NTHL1P78549 312 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 TFAMQ00059 246 aaKnown RBP15.01□□□□□ -0.01
CLN3-235ENST00000568497 DSG1Q02413 1049 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 ADCY1Q08828 1119 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 ZBTB6Q15916 424 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 SLFN12LQ6IEE8 588 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 UNQ6494/PRO21346Q6UXR6 183 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 GPR65Q8IYL9 337 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 OR5B17Q8NGF7 314 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 PLEKHO2Q8TD55 490 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 FGF13Q92913 245 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 CCDC127Q96BQ5 260 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 TMEM206Q9H813 350 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.01□□□□□ -0.016e-9■■■■■ 134.6
CLN3-235ENST00000568497 HEBP1Q9NRV9 189 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 RBAKQ9NYW8 714 aaPredicted RBP15.01□□□□□ -0.01
CLN3-235ENST00000568497 MAN1B1Q9UKM7 699 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 FRYQ5TBA9 3013 aa15.01□□□□□ -0.01
CLN3-235ENST00000568497 EXTL3O43909 919 aa15□□□□□ -0.01
CLN3-235ENST00000568497 ZMYND10O75800 440 aa15□□□□□ -0.01
CLN3-235ENST00000568497 CD44P16070 742 aaKnown RBP15□□□□□ -0.01
CLN3-235ENST00000568497 TMEM132DQ14C87 1099 aa15□□□□□ -0.01
CLN3-235ENST00000568497 KNOP1Q1ED39 458 aaKnown RBP15□□□□□ -0.01
CLN3-235ENST00000568497 LILRA6Q6PI73 481 aa15□□□□□ -0.01
CLN3-235ENST00000568497 BRSK2Q8IWQ3 736 aa15□□□□□ -0.01
CLN3-235ENST00000568497 GPD1LQ8N335 351 aa15□□□□□ -0.01
CLN3-235ENST00000568497 C12orf50Q8NA57 414 aaPredicted RBP15□□□□□ -0.01
CLN3-235ENST00000568497 KCTD10Q9H3F6 313 aa15□□□□□ -0.01
CLN3-235ENST00000568497 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms