RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 TIMM13Q9Y5L4 95 aaPredicted RBP13.05□□□□□ -0.32
SF3B3-208ENST00000567250 BECN2A8MW95 431 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 KCNJ18B7U540 433 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 TACC1O75410 805 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 RPL17P18621 184 aaKnown RBP13.04□□□□□ -0.32
SF3B3-208ENST00000567250 PCSK1P29120 753 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 OR1D2P34982 312 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 ZNF165P49910 485 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 KCNH2Q12809 1159 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 SMARCB1Q12824 385 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 RAB33AQ14088 237 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 KCNJ12Q14500 433 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 CBWD6Q4V339 395 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 CBWD3Q5JTY5 395 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 CBWD5Q5RIA9 395 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 WSCD1Q658N2 575 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 TPGS2Q68CL5 300 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 LLGL2Q6P1M3 1020 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 GLYCTKQ8IVS8 523 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 PDCL2Q8N4E4 241 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 TTC39CQ8N584 583 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 HDAC7Q8WUI4 952 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 CLSTN3Q9BQT9 956 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 FUCA2Q9BTY2 467 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 NIF3L1Q9GZT8 377 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 PLEKHA4Q9H4M7 779 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 FAM124BQ9H5Z6 455 aaPredicted RBP13.04□□□□□ -0.32
SF3B3-208ENST00000567250 UBE2ZQ9H832 354 aaPredicted RBP13.04□□□□□ -0.32
SF3B3-208ENST00000567250 DDX43Q9NXZ2 648 aaKnown RBP13.04□□□□□ -0.32
SF3B3-208ENST00000567250 NXF1Q9UBU9 619 aaKnown RBP13.04□□□□□ -0.32
SF3B3-208ENST00000567250 MAFFQ9ULX9 164 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 COQ4Q9Y3A0 265 aa13.04□□□□□ -0.32
SF3B3-208ENST00000567250 TBC1D4O60343 1298 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 HOXB8P17481 243 aaPredicted RBP13.03□□□□□ -0.32
SF3B3-208ENST00000567250 WARSP23381 471 aaKnown RBP13.03□□□□□ -0.32
SF3B3-208ENST00000567250 ROR1Q01973 937 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 SOWAHAQ2M3V2 549 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 CTC1Q2NKJ3 1217 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 TCP11X2Q5H9J9 407 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 CDKAL1Q5VV42 579 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 TMEM184AQ6ZMB5 413 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 SCARA5Q6ZMJ2 495 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 CCDC149Q6ZUS6 474 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 RTL10Q7L3V2 364 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 IRF2BP1Q8IU81 584 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 DCP1BQ8IZD4 617 aaKnown RBP13.03□□□□□ -0.32
SF3B3-208ENST00000567250 AOPEPQ8N6M6 819 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 ZNF461Q8TAF7 563 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 ACBD6Q9BR61 282 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 TUBGCP2Q9BSJ2 902 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 SNX25Q9H3E2 840 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 SFXN1Q9H9B4 322 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 GCNT4Q9P109 453 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 THEGQ9P2T0 379 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
SF3B3-208ENST00000567250 PTPRDP23468 1912 aa13.02□□□□□ -0.32
SF3B3-208ENST00000567250 GTPBP10A4D1E9 387 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 PES1O00541 588 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 TGM5O43548 720 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 TBX10O75333 385 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 ATF2P15336 505 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 EPCAMP16422 314 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 TBXAS1P24557 533 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 ELF1P32519 619 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 GTF2F1P35269 517 aaKnown RBP eCLIP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 ARPP19P56211 112 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 YWHAEP62258 255 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 ADAM15Q13444 863 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 KCNC3Q14003 757 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 MAPRE1Q15691 268 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 NFE2Q16621 373 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 AAK1Q2M2I8 961 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 HSP90AA4PQ58FG1 418 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 INTS6LQ5JSJ4 861 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 LIMS2Q7Z4I7 341 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 PALB2Q86YC2 1186 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 KREMEN2Q8NCW0 462 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 OR6B3Q8NGW1 331 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 C2orf15Q8WU43 125 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 SLC22A17Q8WUG5 538 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 KBTBD7Q8WVZ9 684 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 NT5C1BQ96P26 610 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 BCO2Q9BYV7 579 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 CYP3A43Q9HB55 503 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 RTN4Q9NQC3 1192 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 MAN1C1Q9NR34 630 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 SAMSN1Q9NSI8 373 aaKnown RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 ZDHHC7Q9NXF8 308 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 BARX2Q9UMQ3 279 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-208ENST00000567250 FAM50BQ9Y247 325 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 COL6A3P12111 3177 aa13.02□□□□□ -0.33
SF3B3-208ENST00000567250 WDR27A2RRH5 827 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 PRRG1O14668 218 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 GABRDO14764 452 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 LINC01565O15544 149 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 GLP2RO95838 553 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 CDK11BP21127 795 aaKnown RBP13.01□□□□□ -0.33
SF3B3-208ENST00000567250 KCNA5P22460 613 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 HOXA9P31269 272 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 ASPAP45381 313 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms