RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CBWD6Q4V339 395 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 CBWD3Q5JTY5 395 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 CBWD5Q5RIA9 395 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 ZBTB41Q5SVQ8 909 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 ARHGEF18Q6ZSZ5 1173 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 TTC30BQ8N4P2 665 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 CCDC33Q8N5R6 958 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 DUSP9Q99956 384 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 FTHL17Q9BXU8 183 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 ATXN3LQ9H3M9 355 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 DHX33Q9H6R0 707 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 UBN1Q9NPG3 1134 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 MMEP08473 750 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 PTPN11Q06124 597 aaPredicted RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 MTM1Q13496 603 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 MAPRE1Q15691 268 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 PLPP4Q5VZY2 271 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 DDX53Q86TM3 631 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 SLC47A2Q86VL8 602 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 STKLD1Q8NE28 680 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 SLC2A14Q8TDB8 520 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 PABPC5Q96DU9 382 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 FAM118BQ9BPY3 351 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 PRDM10Q9NQV6 1147 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 SAMD15Q9P1V8 674 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 MYADML2A6NDP7 307 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PRR23AA6NEV1 266 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 EFCAB8A8MWE9 144 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 DFFAO00273 331 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 CYBBP04839 570 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 GYPCP04921 128 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 MAPTP10636 758 aaKnown RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 MBL2P11226 248 aaPredicted RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 YWHAGP61981 247 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS39-205ENST00000562258 GTF2BQ00403 316 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 ELF2Q15723 593 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 RUFY4Q6ZNE9 571 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TRIM59Q8IWR1 403 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 ADAM32Q8TC27 787 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PARVAQ9NVD7 372 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TRIM10Q9UDY6 481 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PCDHA2Q9Y5H9 948 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 NHSQ6T4R5 1651 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TOGARAM1Q9Y4F4 1720 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 LRRIQ3A6PVS8 624 aaPredicted RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 H7C4K7 107 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 M0QYT0 321 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 OR1D2P34982 312 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 SLC12A2P55011 1212 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 SARNPP82979 210 aaKnown RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 ITIH3Q06033 890 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 ERCC6LQ2NKX8 1250 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PPP1R2P3Q6NXS1 205 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TRIM72Q6ZMU5 477 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 IFT20Q8IY31 132 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TMC2Q8TDI7 906 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 USP33Q8TEY7 942 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 MED15Q96RN5 788 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 MRPL17Q9NRX2 175 aaKnown RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 TRPM5Q9NZQ8 1165 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 FAM8A1Q9UBU6 413 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 A0A087X0T9 212 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 A0A1W2PQ45 241 aaPredicted RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 A0A1W2PQY0 241 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 CXCL14O95715 111 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 FAM228BP0C875 321 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PLTPP55058 493 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 PURAQ00577 322 aaKnown RBP9.75□□□□□ -0.85
VPS39-205ENST00000562258 CACUL1Q86Y37 369 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 TRAF3IP3Q9Y228 551 aa9.75□□□□□ -0.85
VPS39-205ENST00000562258 DHX15O43143 795 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 CLTBP09497 229 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 OR4Q2P0C623 313 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 KRT15P19012 456 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 BMP6P22004 513 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 HPDP32754 393 aaPredicted RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 LHX1P48742 406 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 ANO4Q32M45 955 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CCDC91Q7Z6B0 441 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 FAM131BQ86XD5 332 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SLC20A1Q8WUM9 679 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 AGAP3Q96P47 875 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 TMEM134Q9H6X4 195 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SMYD3Q9H7B4 428 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 METTL5Q9NRN9 209 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 ABCF3Q9NUQ8 709 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 PPME1Q9Y570 386 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CCDC78A2IDD5 438 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SPTLC1O15269 473 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 KLRC4O43908 158 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 ATF2P15336 505 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 EPHB3P54753 998 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 AP1B1Q10567 949 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 STILQ15468 1287 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 KCNT1Q5JUK3 1230 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 IL31Q6EBC2 164 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SCUBE3Q8IX30 993 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SHISA4Q96DD7 197 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 TBC1D31Q96DN5 1066 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 TMEM176AQ96HP8 235 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms