RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 NYAP2Q9P242 653 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 KDM5CP41229 1560 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 COL15A1P39059 1388 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 MYMKA6NI61 221 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 CST8O60676 142 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 ALDH1A1P00352 501 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 GRIK1P39086 918 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 CORO7P57737 925 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 KIZQ2M2Z5 673 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 RABL6Q3YEC7 729 aaPredicted RBP13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 EFHC1Q5JVL4 640 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 CCNJLQ8IV13 435 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 FAM162AQ96A26 154 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 SMARCAD1Q9H4L7 1026 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 KLHL11Q9NVR0 708 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 MAFGO15525 162 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 COPAP53621 1224 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 GEMIN4P57678 1058 aaKnown RBP13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 SP8Q8IXZ3 490 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 IGDCC4Q8TDY8 1250 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 TEX13BQ9BXU2 312 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 GTF3C4Q9UKN8 822 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 AP4S1Q9Y587 144 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 ARAP3Q8WWN8 1544 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ENO4A6NNW6 628 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 TXNP10599 105 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ACOT2P49753 483 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 CSTF3Q12996 717 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 COG2Q14746 738 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PRPF39Q86UA1 669 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 GALNT4Q8N4A0 578 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZNF507Q8TCN5 953 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PPP1R36Q96LQ0 422 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 MAP3K14Q99558 947 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 RIT2Q99578 217 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 SLC40A1Q9NP59 571 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 TSR3Q9UJK0 312 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 MAGEA13PA6NCF6 341 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 TOMM70O94826 608 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 CYP2C8P10632 490 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PCSK1P29120 753 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 COILP38432 576 aaPredicted RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 LINC00523Q86TU6 105 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 OR2W6PQ8NHA6 318 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 RFWD2Q8NHY2 731 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 RIN2Q8WYP3 895 aaPredicted RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 FAR2Q96K12 515 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZNF668Q96K58 619 aaPredicted RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 KANSL1LA0AUZ9 987 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 IGF2BP3O00425 579 aaKnown RBP eCLIP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 CAND2O75155 1236 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 KRT75O95678 551 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ST8SIA6P61647 398 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 SLC29A2Q14542 456 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 FEZF2Q8TBJ5 459 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 HPS3Q969F9 1004 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 TUBGCP3Q96CW5 907 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 CNDP1Q96KN2 507 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 CD274Q9NZQ7 290 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PIN4Q9Y237 131 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 RASSF9O75901 435 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 GYPCP04921 128 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 AKT1P31749 480 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ERFP50548 548 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 NPEPPSP55786 919 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 SNX17Q15036 470 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 FAM83EQ2M2I3 478 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 HORMAD1Q86X24 394 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 RBM46Q8TBY0 533 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 NSUN4Q96CB9 384 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PABPC5Q96DU9 382 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 PABPC3Q9H361 631 aaKnown RBP13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 DLGAP2Q9P1A6 1054 aa13.78□□□□□ -0.2
CSPG4P11-201ENST00000560634 ADGBQ8N7X0 1667 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 TRIM66O15016 1216 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 HLA-DRAP01903 254 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 CYP19A1P11511 503 aaPredicted RBP13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 SLC9A1P19634 815 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 GPD1P21695 349 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 PTGER2P43116 358 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 RGS7P49802 495 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 SEC24CP53992 1094 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 KRR1Q13601 381 aaKnown RBP13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 KLHDC7AQ5VTJ3 777 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 PTRHD1Q6GMV3 140 aaKnown RBP13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 PLA2G12BQ9BX93 195 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 ILKAPQ9H0C8 392 aaPredicted RBP13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 SLC38A7Q9NVC3 462 aa13.77□□□□□ -0.2
CSPG4P11-201ENST00000560634 ASMTLO95671 621 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 RPA1P27694 616 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 TTC33Q6PID6 262 aaPredicted RBP13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 KDM7AQ6ZMT4 941 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 DDX42Q86XP3 938 aaKnown RBP eCLIP13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 SYNE4Q8N205 404 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 DIS3LQ8TF46 1054 aaKnown RBP13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 NIF3L1Q9GZT8 377 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 RPAP3Q9H6T3 665 aaPredicted RBP13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 LOC100653049A0A140TA62 436 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 SOAT2O75908 522 aa13.77□□□□□ -0.21
CSPG4P11-201ENST00000560634 KRT34O76011 436 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms