RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TLE6Q9H808 572 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 DSEQ9UL01 958 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 CDY1Q9Y6F8 540 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 BECN2A8MW95 431 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 GABRDO14764 452 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 CAVIN2O95810 425 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 WARSP23381 471 aaKnown RBP23.33■■□□□ 1.33
SNX1-210ENST00000560260 NDUFV1P49821 464 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 COPB1P53618 953 aaKnown RBP23.33■■□□□ 1.33
SNX1-210ENST00000560260 CDH8P55286 799 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 LRMPQ12912 555 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 BMS1Q14692 1282 aaKnown RBP23.33■■□□□ 1.33
SNX1-210ENST00000560260 CCDC142Q17RM4 750 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 SLC8B1Q6J4K2 584 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 PDXDC1Q6P996 788 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 CRACR2AQ9BSW2 395 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 EMILIN2Q9BXX0 1053 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 BCO2Q9BYV7 579 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 IMPG2Q9BZV3 1241 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 NIF3L1Q9GZT8 377 aa23.33■■□□□ 1.33
SNX1-210ENST00000560260 ARHGEF37A1IGU5 675 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 H7C4K7 107 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 LINC01565O15544 149 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 TACC1O75410 805 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 GLP2RO95838 553 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 OR4Q2P0C623 313 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 APBA1Q02410 837 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 KCNC3Q14003 757 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 CCDC85BQ15834 202 aaPredicted RBP23.33■■□□□ 1.32
SNX1-210ENST00000560260 DPH6Q7L8W6 267 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 TMEM86AQ8N2M4 240 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 SLC22A17Q8WUG5 538 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 ARID3AQ99856 593 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 IGFLR1Q9H665 355 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 GCNT4Q9P109 453 aa23.33■■□□□ 1.32
SNX1-210ENST00000560260 EPCAMP16422 314 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 ACAT1P24752 427 aaKnown RBP23.32■■□□□ 1.32
SNX1-210ENST00000560260 OR1D2P34982 312 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 CLCN4P51793 760 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 ROR1Q01973 937 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 CREMQ03060 361 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 METTL23Q86XA0 190 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 ARHGEF19Q8IW93 802 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 EHBP1Q8NDI1 1231 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 DDX43Q9NXZ2 648 aaKnown RBP23.32■■□□□ 1.32
SNX1-210ENST00000560260 HMGXB4Q9UGU5 601 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 HCFC2Q9Y5Z7 792 aa23.32■■□□□ 1.32
SNX1-210ENST00000560260 WDR27A2RRH5 827 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 ADH1AP07327 375 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 WEE2P0C1S8 567 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 SLC9A1P19634 815 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 CDK11BP21127 795 aaKnown RBP23.31■■□□□ 1.32
SNX1-210ENST00000560260 LMO2P25791 158 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 KLRC2P26717 231 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 RAB33AQ14088 237 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 COL19A1Q14993 1142 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 DPY19L2P1Q6NXN4 242 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 RNF214Q8ND24 703 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 SPATA18Q8TC71 538 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 KAT5Q92993 513 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 SIX2Q9NPC8 291 aa23.31■■□□□ 1.32
SNX1-210ENST00000560260 PRUNE2Q8WUY3 3088 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 GTPBP10A4D1E9 387 aaKnown RBP23.3■■□□□ 1.32
SNX1-210ENST00000560260 LRRC10BA6NIK2 292 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 OR6C75A6NL08 312 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 LGALS16A8MUM7 142 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 PES1O00541 588 aaKnown RBP23.3■■□□□ 1.32
SNX1-210ENST00000560260 ARPP19P56211 112 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 KCNMA1Q12791 1236 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 WDR44Q5JSH3 913 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 LLGL2Q6P1M3 1020 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 LILRA6Q6PI73 481 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 PALB2Q86YC2 1186 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 EFHBQ8N7U6 833 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 CCDC150Q8NCX0 1101 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 PPM1EQ8WY54 764 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 PPP2R3CQ969Q6 453 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 NT5C1BQ96P26 610 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 CDCA3Q99618 268 aaPredicted RBP23.3■■□□□ 1.32
SNX1-210ENST00000560260 PKMYT1Q99640 499 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 ZCWPW1Q9H0M4 648 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 DPEP3Q9H4B8 488 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 STXBP5LQ9Y2K9 1186 aa23.3■■□□□ 1.32
SNX1-210ENST00000560260 COL6A3P12111 3177 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 TGM5O43548 720 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 VNN2O95498 520 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 P4HA1P13674 534 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 PON1P27169 355 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 LHX1P48742 406 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 CDR1P51861 262 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 CETN1Q12798 172 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 EXOC3L4Q17RC7 722 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 CTC1Q2NKJ3 1217 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 GJB7Q6PEY0 223 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 TRIM65Q6PJ69 517 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 GBP6Q6ZN66 633 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 LRRTM3Q86VH5 581 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 GAS2L3Q86XJ1 694 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 UBR7Q8N806 425 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 MAFAQ8NHW3 353 aaPredicted RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms