RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TMEM209Q96SK2 561 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 ATXN3LQ9H3M9 355 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 SH2B1Q9NRF2 756 aaPredicted RBP8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 OBP2AQ9NY56 170 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 ANKFY1Q9P2R3 1169 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 ZMIZ1Q9ULJ6 1067 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 SLC27A5Q9Y2P5 690 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 APC2O95996 2303 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 CCDC163A0A0D9SF12 145 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 OTOL1A6NHN0 477 aaPredicted RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 DPYSL4O14531 572 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 PPEF2O14830 753 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HIP1RO75146 1068 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 TOP3BO95985 862 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 SPINK2P20155 84 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 MARCKSP29966 332 aaPredicted RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 LRPAP1P30533 357 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 CCT6AP40227 531 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 NOVA1P51513 510 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 CDR1P51861 262 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 EPHB3P54753 998 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 GUCY1B3Q02153 619 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 ST3GAL1Q11201 340 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 GPR17Q13304 367 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 DMP1Q13316 513 aaPredicted RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 NOLC1Q14978 699 aaKnown RBP eCLIP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 ZNF174Q15697 407 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 ME3Q16798 604 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 ITPRIPL2Q3MIP1 535 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 PLK5Q496M5 336 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 TMEM196Q5HYL7 178 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HAUS3Q68CZ6 603 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 NAIF1Q69YI7 327 aaPredicted RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 CENPPQ6IPU0 288 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HAUS6Q7Z4H7 955 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 DNAJB7Q7Z6W7 309 aaPredicted RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 RIN3Q8TB24 985 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 PSMG2Q969U7 264 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 ZC3H10Q96K80 434 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HHIPQ96QV1 700 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 LPIN3Q9BQK8 851 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 TCHPQ9BT92 498 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 EDEM2Q9BV94 578 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 RUSC1Q9BVN2 902 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HAPLN2Q9GZV7 340 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 TMEM134Q9H6X4 195 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 IL21Q9HBE4 155 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 HPS4Q9NQG7 708 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 KMT5AQ9NQR1 393 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 VPS45Q9NRW7 570 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 DDX19AQ9NUU7 478 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 KIAA1024Q9UPX6 916 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 WASF3Q9UPY6 502 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 PCDHGA5Q9Y5G8 931 aa8.9□□□□□ -0.98
CCDC88C-214ENST00000557507 DMXL2Q8TDJ6 3036 aa8.9□□□□□ -0.99
CCDC88C-214ENST00000557507 PTPRBP23467 1997 aa8.9□□□□□ -0.99
CCDC88C-214ENST00000557507 MYH10P35580 1976 aa8.9□□□□□ -0.99
CCDC88C-214ENST00000557507 PCDH15Q96QU1 1955 aa8.9□□□□□ -0.99
CCDC88C-214ENST00000557507 PLXNB3Q9ULL4 1909 aa8.9□□□□□ -0.99
CCDC88C-214ENST00000557507 LNP1A1A4G5 178 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 OR6C75A6NL08 312 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 E9PMD0 336 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 DCLK1O15075 740 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 SLC16A4O15374 487 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 RNF40O75150 1001 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 AKAP3O75969 853 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 EGFP01133 1207 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 ATF6P18850 670 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 MUTP22033 750 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 WEE1P30291 646 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 ALDH1A3P47895 512 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 MCM2P49736 904 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 PLCB2Q00722 1185 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 ZNF252P-AS1Q0IIN9 211 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 FOXC1Q12948 553 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 NBR1Q14596 966 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 ARHGAP15Q53QZ3 475 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 TRIM68Q6AZZ1 485 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 KCNK18Q7Z418 384 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 OR10T2Q8NGX3 314 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 DUSP15Q9H1R2 295 aaPredicted RBP8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 SLC8A2Q9UPR5 921 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 CCL26Q9Y258 94 aa8.89□□□□□ -0.99
CCDC88C-214ENST00000557507 ITPR1Q14643 2758 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TTC26A0AVF1 554 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 C4orf47A7E2U8 309 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 SFI1A8K8P3 1242 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 PP2D1A8MPX8 630 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TOM1L1O75674 476 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 ARSAP15289 507 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 U2AF2P26368 475 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TNFSF9P41273 254 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 FXR2P51116 673 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 CREB5Q02930 508 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 GRSF1Q12849 480 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TRIM29Q14134 588 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 MYBPC2Q14324 1141 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 ZBTB6Q15916 424 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TTC38Q5R3I4 469 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 OVOS1Q6IE37 1185 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms