RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 SEL1LQ9UBV2 794 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ZC3H7BQ9UGR2 993 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 APPL1Q9UKG1 709 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CDYLQ9Y232 598 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ZMYM2Q9UBW7 1377 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SETD1AO15047 1707 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ASTN1O14525 1302 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ADGRA3Q8IWK6 1321 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ZNF142P52746 1687 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 MST1RQ04912 1400 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ARHGAP10A1A4S6 786 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RBAK-RBAKDNI3L0D1 243 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SLC26A4O43511 780 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 GRAP2O75791 330 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 LCA5LO95447 670 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ZSCAN5DPP0CG00 497 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SRGAP2BP0DMP2 458 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TBXAS1P24557 533 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 QARSP47897 775 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 KCNA1Q09470 495 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 PTK6Q13882 451 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ZBTB41Q5SVQ8 909 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 FAM102AQ5T9C2 384 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RNF220Q5VTB9 566 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 KDELC2Q7Z4H8 507 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 THNSL1Q8IYQ7 743 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 UBA3Q8TBC4 463 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CKAP2Q8WWK9 683 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 MTBPQ96DY7 904 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 MTMR9Q96QG7 549 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TMEM8AQ9HCN3 771 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 AGAP1Q9UPQ3 857 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ROBO1Q9Y6N7 1651 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 PARP4Q9UKK3 1724 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ESYT2A0FGR8 921 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 KPNA7A9QM74 516 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 E7ENQ6 273 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SH3BP5O60239 455 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TPP2P29144 1249 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SULT1E1P49888 294 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 NUDT2P50583 147 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 PRAMEP78395 509 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 BMPR2Q13873 1038 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RRP1BQ14684 758 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 KCNT1Q5JUK3 1230 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SNX30Q5VWJ9 437 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RFWD3Q6PCD5 774 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SPOCD1Q6ZMY3 1216 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TSHZ1Q6ZSZ6 1077 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 LRRC6Q86X45 466 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CDKL3Q8IVW4 592 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CCNYL1Q8N7R7 359 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 NLRP4Q96MN2 994 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CCT7Q99832 543 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 DDX50Q9BQ39 737 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SNX25Q9H3E2 840 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SENP1Q9P0U3 644 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 HESX1Q9UBX0 185 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 GGA2Q9UJY4 613 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 AGO2Q9UKV8 859 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CORO1CQ9ULV4 474 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TNS2Q63HR2 1409 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 INO80B-WBP1J3KQ70 363 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 NOL4O94818 638 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 COPAP53621 1224 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RPS6P62753 249 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CWF19L1Q69YN2 538 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 BTNL9Q6UXG8 535 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 LRRC55Q6ZSA7 311 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 FEZF2Q8TBJ5 459 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CBWD1Q9BRT8 395 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 POLR3CQ9BUI4 534 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 INO80BQ9C086 356 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TDRD3Q9H7E2 651 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 IL1RL2Q9HB29 575 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TRPC5Q9UL62 973 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TRIM49D1C9J1S8 452 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 F5H6K3 240 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 AKAP10O43572 662 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CYTH3O43739 400 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SNX3O60493 162 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ENTPD5O75356 428 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 WFS1O76024 890 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 PDE5AO76074 875 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 SRP72O76094 671 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 GSTT1P30711 240 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 RGS7P49802 495 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 NLRP11P59045 1033 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 KLRC3Q07444 240 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TRIM28Q13263 835 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ACBD5Q5T8D3 534 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 NOP9Q86U38 636 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TMCO5AQ8N6Q1 288 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 TCP10LQ8TDR4 215 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 DIS3LQ8TF46 1054 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 PYDC1Q8WXC3 89 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ARHGEF1Q92888 912 aaKnown RBP5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CNKSR1Q969H4 720 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 ELMO2Q96JJ3 720 aa5.22□□□□□ -1.57
SYNE2-223ENST00000557005 CCDC138Q96M89 665 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms