RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 CD44P16070 742 aaKnown RBP11.48□□□□□ -0.57
LINC00239-201ENST00000556973 BMP6P22004 513 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 CCNE1P24864 410 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 SSTR3P32745 418 aaPredicted RBP11.48□□□□□ -0.57
LINC00239-201ENST00000556973 LHX1P48742 406 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 ADCY1Q08828 1119 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 SMARCB1Q12824 385 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 FOXR2Q6PJQ5 311 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 PDCL2Q8N4E4 241 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 SLC7A14Q8TBB6 771 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 SYAP1Q96A49 352 aaPredicted RBP11.48□□□□□ -0.57
LINC00239-201ENST00000556973 RPGRIP1Q96KN7 1286 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 ACBD6Q9BR61 282 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 ZCWPW1Q9H0M4 648 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 CLSTN2Q9H4D0 955 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 CD320Q9NPF0 282 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 DDX43Q9NXZ2 648 aaKnown RBP11.48□□□□□ -0.57
LINC00239-201ENST00000556973 HSFX1Q9UBD0 423 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 CDH22Q9UJ99 828 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 L1RE1Q9UN81 338 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 USTQ9Y2C2 406 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 BRWD1Q9NSI6 2320 aa11.48□□□□□ -0.57
LINC00239-201ENST00000556973 BICDL2A1A5D9 508 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 GABRDO14764 452 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 SEC24AO95486 1093 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 LRG1P02750 347 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 OR4Q2P0C623 313 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 EPB41P11171 864 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 GTF2H1P32780 548 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 PMS1P54277 932 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 MYL6P60660 151 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 MYL7Q01449 175 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 BIRC3Q13489 604 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 SOWAHAQ2M3V2 549 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 SGSM1Q2NKQ1 1148 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 WDR72Q3MJ13 1102 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 ZACNQ401N2 412 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 C1orf220Q5T0J3 134 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 TDRD10Q5VZ19 366 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 SV2AQ7L0J3 742 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 LIMS2Q7Z4I7 341 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 FILIP1Q7Z7B0 1213 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 ZC3H3Q8IXZ2 948 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 DCP1BQ8IZD4 617 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 PLCD3Q8N3E9 789 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 OR10T2Q8NGX3 314 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 FEZF2Q8TBJ5 459 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 C2orf15Q8WU43 125 aaKnown RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 ACSF2Q96CM8 615 aaPredicted RBP11.47□□□□□ -0.57
LINC00239-201ENST00000556973 PGLYRP2Q96PD5 576 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 TMEM209Q96SK2 561 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 MMS19Q96T76 1030 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 RTP3Q9BQQ7 232 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 XYLT2Q9H1B5 865 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 VRTNQ9H8Y1 702 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 VCANP13611 3396 aa11.47□□□□□ -0.57
LINC00239-201ENST00000556973 TRIM49BA6NDI0 452 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 SLC16A3O15427 465 aaKnown RBP11.46□□□□□ -0.57
LINC00239-201ENST00000556973 CCL16O15467 120 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 STX10O60499 249 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 VNN1O95497 513 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 PTPN2P17706 415 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 TUFMP49411 452 aaKnown RBP11.46□□□□□ -0.57
LINC00239-201ENST00000556973 TNNC1P63316 161 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 DUSP4Q13115 394 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 NCOA4Q13772 614 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 SLC39A12Q504Y0 691 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 OTOP3Q7RTS5 596 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 GRASPQ7Z6J2 395 aaPredicted RBP11.46□□□□□ -0.57
LINC00239-201ENST00000556973 LRRTM3Q86VH5 581 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 ADGRF2Q8IZF7 708 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 ZDHHC14Q8IZN3 488 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 ELMOD1Q8N336 334 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 NELFBQ8WX92 580 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 TAF4BQ92750 862 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 EEF2KMTQ96G04 330 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 CEP63Q96MT8 703 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 NUP62CLQ9H1M0 184 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.46□□□□□ -0.57
LINC00239-201ENST00000556973 POLIQ9UNA4 740 aa11.46□□□□□ -0.57
LINC00239-201ENST00000556973 CLUHO75153 1309 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 MTMR11A4FU01 709 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 TACC1O75410 805 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 VNN2O95498 520 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 P4HA1P13674 534 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 WARSP23381 471 aaKnown RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 PCSK1P29120 753 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 GNL1P36915 607 aaPredicted RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 ALDH1A3P47895 512 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 TSPY1Q01534 308 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 PPP3CAQ08209 521 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 TWF1Q12792 350 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 PAK1Q13153 545 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 PLD1Q13393 1074 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 ZNF699Q32M78 642 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 ZNF667Q5HYK9 610 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 KRT39Q6A163 491 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 KLHL10Q6JEL2 608 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 TTI2Q6NXR4 508 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 FRMD5Q7Z6J6 570 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms