RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PDCD11Q14690 1871 aaKnown RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 RCCD1A6NED2 376 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 HUS1O60921 280 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 KIF4AO95239 1232 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 PDGFRBP09619 1106 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 CCDC175P0C221 793 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 BRD2P25440 801 aaKnown RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 LMO2P25791 158 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 PBX3P40426 434 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 KCNJ6P48051 423 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 CDR1P51861 262 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 RAD23BP54727 409 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 WDR5P61964 334 aaKnown RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 SPA17Q15506 151 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 WSCD1Q658N2 575 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 DSTYKQ6XUX3 929 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 REXO1L1PQ8IX06 675 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 PDCL2Q8N4E4 241 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 APPL2Q8NEU8 664 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 SLC30A5Q8TAD4 765 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 KBTBD7Q8WVZ9 684 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 TFAP2BQ92481 460 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 DPF3Q92784 378 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 TOP1MTQ969P6 601 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 DDX27Q96GQ7 796 aaKnown RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 FAXDC2Q96IV6 333 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 PPP1R13BQ96KQ4 1090 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 LPIN3Q9BQK8 851 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 LZTFL1Q9NQ48 299 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 TAS2R14Q9NYV8 317 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 NAGPAQ9UK23 515 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 BARX2Q9UMQ3 279 aaPredicted RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 PCDHA13Q9Y5I0 950 aa10.89□□□□□ -0.67
SRP54-208ENST00000555557 LAMA2P24043 3122 aaKnown RBP10.89□□□□□ -0.67
SRP54-208ENST00000555557 ZBBXA8MT70 800 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 NT5C1B-RDH14C9J2C7 533 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 THAP12O43422 761 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 DGKIO75912 1065 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 LCA5LO95447 670 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 PFKMP08237 780 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 CD19P15391 556 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 MAGEA1P43355 309 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 BPIFB4P59827 614 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 YWHAEP62258 255 aaKnown RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 CDR2Q01850 454 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 FPGSQ05932 587 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 INCA1Q0VD86 236 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 BMS1Q14692 1282 aaKnown RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 CCDC122Q5T0U0 273 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ALKBH5Q6P6C2 394 aaKnown RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 DCLRE1AQ6PJP8 1040 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 FAM43BQ6ZT52 329 aaPredicted RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 DPH6Q7L8W6 267 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 VPS36Q86VN1 386 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 C12orf29Q8N999 325 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 SLC4A11Q8NBS3 891 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ZNF606Q8WXB4 792 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 TMEM176AQ96HP8 235 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 PACSIN1Q9BY11 444 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 DPEP3Q9H4B8 488 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 TRIM10Q9UDY6 481 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ALPK3Q96L96 1907 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 A8MXQ7 604 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 NRP1O14786 923 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 HOXA2O43364 376 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 IPO7O95373 1038 aaKnown RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 FGBP02675 491 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 AMHP03971 560 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 GNL1P36915 607 aaPredicted RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 KRT83P78385 493 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 PPIGQ13427 754 aaKnown RBP eCLIP10.88□□□□□ -0.676e-7■□□□□ 10.2
SRP54-208ENST00000555557 LIMS2Q7Z4I7 341 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ACOT1Q86TX2 421 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 OSTM1Q86WC4 334 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 PASD1Q8IV76 773 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ADGRF2Q8IZF7 708 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 TOP6BLQ8N6T0 577 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 HEXIM2Q96MH2 286 aaKnown RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 UROC1Q96N76 676 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 HTATIP2Q9BUP3 242 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 NT5C1AQ9BXI3 368 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 LACRTQ9GZZ8 138 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 CXXC1Q9P0U4 656 aaPredicted RBP10.88□□□□□ -0.67
SRP54-208ENST00000555557 DUSP10Q9Y6W6 482 aa10.88□□□□□ -0.67
SRP54-208ENST00000555557 ZSCAN12O43309 604 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 TACC1O75410 805 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 ALDH2P05091 517 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 ACAT1P24752 427 aaKnown RBP10.87□□□□□ -0.67
SRP54-208ENST00000555557 SLC11A1P49279 550 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 AARSP49588 968 aaKnown RBP eCLIP10.87□□□□□ -0.67
SRP54-208ENST00000555557 TMEM240Q5SV17 173 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 KIAA1328Q86T90 577 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 CYFIP2Q96F07 1278 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.87□□□□□ -0.67
SRP54-208ENST00000555557 IRX2Q9BZI1 471 aaPredicted RBP10.87□□□□□ -0.67
SRP54-208ENST00000555557 PDCL3Q9H2J4 239 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 SNX25Q9H3E2 840 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 NENFQ9UMX5 172 aa10.87□□□□□ -0.67
SRP54-208ENST00000555557 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.87□□□□□ -0.67
SRP54-208ENST00000555557 MICAL3Q7RTP6 2002 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms