RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 FAM193BQ96PV7 902 aaPredicted RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 TMEM209Q96SK2 561 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 DPEP3Q9H4B8 488 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 VRTNQ9H8Y1 702 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 ZNHIT6Q9NWK9 470 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 KANSL3Q9P2N6 904 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 CYB561D2O14569 222 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 ARHGAP6O43182 974 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 TLL1O43897 1013 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 CSPG5O95196 566 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 SERPING1P05155 500 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 TKTP29401 623 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 AARSP49588 968 aaKnown RBP eCLIP11.51□□□□□ -0.57
TDP1-211ENST00000555178 CYP27A1Q02318 531 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 GFPT1Q06210 699 aaPredicted RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 TAF3Q5VWG9 929 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 DCLRE1AQ6PJP8 1040 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 KCNT2Q6UVM3 1135 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 NOP9Q86U38 636 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 TMTC1Q8IUR5 882 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 CMTR2Q8IYT2 770 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 PDCL2Q8N4E4 241 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 COLGALT1Q8NBJ5 622 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 RSPH1Q8WYR4 309 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 SYN2Q92777 582 aaPredicted RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 RTP3Q9BQQ7 232 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 C17orf80Q9BSJ5 609 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 ELOVL4Q9GZR5 314 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 CISHQ9NSE2 258 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 MTUS1Q9ULD2 1270 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 MYO6Q9UM54 1294 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 FAN1Q9Y2M0 1017 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 REXO2Q9Y3B8 237 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 R3HCC1Q9Y3T6 440 aaKnown RBP11.51□□□□□ -0.57
TDP1-211ENST00000555178 PCDHB4Q9Y5E5 795 aa11.51□□□□□ -0.57
TDP1-211ENST00000555178 HOXA2O43364 376 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 XPOTO43592 962 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 STAU1O95793 577 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 EFEMP2O95967 443 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 ALDH2P05091 517 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 PDGFRBP09619 1106 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 ACAT1P24752 427 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 ATICP31939 592 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 RPL9P32969 192 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 ASTE1Q2TB18 679 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 SPOUT1Q5T280 376 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 KIAA1524Q8TCG1 905 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 SP7Q8TDD2 431 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 EPS8L1Q8TE68 723 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 TSPAN18Q96SJ8 248 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 SLC9A7Q96T83 725 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 RAD9AQ99638 391 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 NUCKS1Q9H1E3 243 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 CERS4Q9HA82 394 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 TRMT1Q9NXH9 659 aaKnown RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 GDAP2Q9NXN4 497 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 PTPRDP23468 1912 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 LINC01553A4QN01 128 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 CA3P07451 260 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 FERP16591 822 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 TBXAS1P24557 533 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 PRKCIP41743 596 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 KIF11P52732 1056 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 TNNC1P63316 161 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 MYO1EQ12965 1108 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 RSPO2Q6UXX9 243 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 CHRDL2Q6WN34 429 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 ZSCAN30Q86W11 494 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 SLC39A11Q8N1S5 342 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 RBBP8NLQ8NC74 664 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 LNX1Q8TBB1 728 aaPredicted RBP11.5□□□□□ -0.57
TDP1-211ENST00000555178 AUTS2Q8WXX7 1259 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 TAF4BQ92750 862 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 SYT11Q9BT88 431 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 PRO3102Q9H379 93 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 ADAMTS1Q9UHI8 967 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 ADAM28Q9UKQ2 775 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 INSL6Q9Y581 213 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 PCDHGC5Q9Y5F6 944 aa11.5□□□□□ -0.57
TDP1-211ENST00000555178 A0A087X0T9 212 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 NDUFA10O95299 355 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 ABL1P00519 1130 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 FAM228BP0C875 321 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 CYP11B1P15538 503 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 DNAJB1P25685 340 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 NDST1P52848 882 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 CDK17Q00537 523 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 SV2CQ496J9 727 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 RTP2Q5QGT7 225 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 DSTYKQ6XUX3 929 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 ENOSF1Q7L5Y1 443 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 GLYCTKQ8IVS8 523 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 C12orf29Q8N999 325 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 TFAP2BQ92481 460 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 DDX27Q96GQ7 796 aaKnown RBP11.49□□□□□ -0.57
TDP1-211ENST00000555178 IGSF21Q96ID5 467 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 CCDC42Q96M95 316 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.49□□□□□ -0.57
TDP1-211ENST00000555178 MRPL9Q9BYD2 267 aaKnown RBP11.49□□□□□ -0.57
TDP1-211ENST00000555178 PBX4Q9BYU1 374 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms