RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 DDIT3P35638 169 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 MCM2P49736 904 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ACOT2P49753 483 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 LILRA4P59901 499 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 GPR17Q13304 367 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ZNF528Q3MIS6 628 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ZC2HC1CQ53FD0 456 aaPredicted RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 OVOS1Q6IE37 1185 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 CENPPQ6IPU0 288 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ZC3H14Q6PJT7 736 aaKnown RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 TSSK4Q6SA08 328 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 USP49Q70CQ1 688 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 BRAPQ7Z569 592 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 TMC8Q8IU68 726 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 MAP4K3Q8IVH8 894 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 CD302Q8IX05 232 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 KIAA2013Q8IYS2 634 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ATAD1Q8NBU5 361 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 LEMD2Q8NC56 503 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 RASSF8Q8NHQ8 419 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 SHKBP1Q8TBC3 707 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ZSCAN18Q8TBC5 510 aaPredicted RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 RSPRY1Q96DX4 576 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 SENP8Q96LD8 212 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 TSPAN18Q96SJ8 248 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 MSTO1Q9BUK6 570 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 OXCT2Q9BYC2 517 aaPredicted RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 CCSER1Q9C0I3 900 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 ASAH2Q9NR71 780 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 FBXO4Q9UKT5 387 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 NDRG2Q9UN36 371 aaKnown RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 MRPS17Q9Y2R5 130 aaKnown RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 CLIC4Q9Y696 253 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 GPR179Q6PRD1 2367 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 A0A1W2PRU2 124 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 ANO9A1A5B4 782 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 MTMR11A4FU01 709 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 HEPACAM2A8MVW5 462 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 MAN2B1O00754 1011 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 NCAM2O15394 837 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 KINO60870 393 aaKnown RBP9.17□□□□□ -0.94
USP28-215ENST00000545608 SOAT2O75908 522 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 SCP2P22307 547 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 MAGEA9P43362 315 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 RPS9P46781 194 aaKnown RBP9.17□□□□□ -0.94
USP28-215ENST00000545608 CDR1P51861 262 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 EPHB3P54753 998 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 MYBPC2Q14324 1141 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 PTPAQ15257 358 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 STXBP5Q5T5C0 1151 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 C9orf57Q5W0N0 161 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 DYMQ7RTS9 669 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 DNAJB7Q7Z6W7 309 aaPredicted RBP9.17□□□□□ -0.94
USP28-215ENST00000545608 MFSD6LQ8IWD5 586 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 TTC9BQ8N6N2 239 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 OR10T2Q8NGX3 314 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 FAM3CQ92520 227 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 LARP4BQ92615 738 aaKnown RBP9.17□□□□□ -0.94
USP28-215ENST00000545608 RUBCNQ92622 972 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 NELL1Q92832 810 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 IRF7Q92985 503 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 EPSTI1Q96J88 318 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 UPF2Q9HAU5 1272 aaKnown RBP9.17□□□□□ -0.94
USP28-215ENST00000545608 TRPV4Q9HBA0 871 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 TRPV5Q9NQA5 729 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 STYXL1Q9Y6J8 313 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 CITO14578 2027 aa9.17□□□□□ -0.94
USP28-215ENST00000545608 VPS37CA5D8V6 355 aaPredicted RBP9.16□□□□□ -0.94
USP28-215ENST00000545608 ARNTLO00327 626 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ZNF263O14978 683 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 TBCAO75347 108 aaKnown RBP9.16□□□□□ -0.94
USP28-215ENST00000545608 CYP11A1P05108 521 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ODC1P11926 461 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ADSSP30520 456 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ALDH1A3P47895 512 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 FOXK2Q01167 660 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 MTAPQ13126 283 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 PLD1Q13393 1074 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 CUL4AQ13619 759 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 TMEM132DQ14C87 1099 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ADALQ6DHV7 355 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ARMCX5Q6P1M9 558 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 FAM173BQ6P4H8 233 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 CRELD2Q6UXH1 353 aaPredicted RBP9.16□□□□□ -0.94
USP28-215ENST00000545608 GAREM2Q75VX8 874 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ZNF720Q7Z2F6 126 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 SFR1Q86XK3 245 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ARID3BQ8IVW6 561 aaPredicted RBP9.16□□□□□ -0.94
USP28-215ENST00000545608 ZBTB44Q8NCP5 570 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 DEPDC1BQ8WUY9 529 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ATRIPQ8WXE1 791 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 RMDN1Q96DB5 314 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 BORCS6Q96GS4 357 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 CLIC6Q96NY7 704 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 LRRC3BQ96PB8 259 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 HINFPQ9BQA5 517 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 MKNK1Q9BUB5 465 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 GPR88Q9GZN0 384 aa9.16□□□□□ -0.94
USP28-215ENST00000545608 ST6GALNAC4Q9H4F1 302 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms