RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 LNX2Q8N448 690 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 NSUN7Q8NE18 718 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 FANK1Q8TC84 345 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 GRK7Q8WTQ7 553 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 FERMT2Q96AC1 680 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 LRRC59Q96AG4 307 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 AMACRQ9UHK6 382 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PTPRUQ92729 1446 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CTAGE15A4D2H0 777 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 DKC1O60832 514 aaKnown RBP eCLIP9.33□□□□□ -0.929e-16■■■■■ 70.8
VPS13D-212ENST00000543766 KERAO60938 352 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PRDM1O75626 825 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 ATP6V1G2O95670 118 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 EEF2P13639 858 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 GRIK4Q16099 956 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 NDUFA5Q16718 116 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PDCD4Q53EL6 469 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PXDC1Q5TGL8 231 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 FAM122CQ6P4D5 195 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 NUP54Q7Z3B4 507 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 KDELC2Q7Z4H8 507 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PPP1R42Q7Z4L9 355 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CTAGE6Q86UF2 777 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 NUDT13Q86X67 352 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 FBXO30Q8TB52 745 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 GGNBP2Q9H3C7 697 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CD93Q9NPY3 652 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 IFNKQ9P0W0 207 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 RCOR1Q9UKL0 485 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 DUSP12Q9UNI6 340 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 PCDHB3Q9Y5E6 796 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 A6NL46 340 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 ZBBXA8MT70 800 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 RASGRF2O14827 1237 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CYP1A1P04798 512 aaPredicted RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CTAGE8P0CG41 777 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 THEGLP0DJG4 465 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 TTKP33981 857 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 ARID5AQ03989 594 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 C1orf185Q5T7R7 199 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 HGSNATQ68CP4 663 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 CTAGE4Q8IX94 777 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 TMIGD2Q96BF3 282 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 LAMA4Q16363 1823 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 CACNA1FO60840 1977 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 OR6C74A6NCV1 312 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 FAM155AB1AL88 458 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 AGPSO00116 658 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ARHGAP6O43182 974 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 NIPSNAP2O75323 286 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 GNA14O95837 355 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TUBBP07437 444 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ITGA2BP08514 1039 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 KRT19P08727 400 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 SNRPAP09012 282 aaKnown RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 RARBP10826 455 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 CLUP10909 449 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 PDCP20941 246 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ATXN3P54252 364 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TUBB2AQ13885 445 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ZBTB41Q5SVQ8 909 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TBC1D1Q86TI0 1168 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TTLQ8NG68 377 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 FNIP1Q8TF40 1166 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TUBB2BQ9BVA1 445 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 MRPL47Q9HD33 250 aaKnown RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 GPHNQ9NQX3 736 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 FARP1Q9Y4F1 1045 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 PCDHGA1Q9Y5H4 931 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 KDM6AO15550 1401 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 TRBV23OR9-2A0A075B6M9 112 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 C17orf113A0A1B0GUU1 675 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 SLC7A4O43246 635 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 FARP2O94887 1054 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 CTRB1P17538 263 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 AMPHP49418 695 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 MLLT6P55198 1093 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 FLOT2Q14254 428 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 PPP2R5DQ14738 602 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ANO4Q32M45 955 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ADCK5Q3MIX3 580 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 RTP2Q5QGT7 225 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 CTRB2Q6GPI1 263 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ERICH5Q6P6B1 374 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 XKR5Q6UX68 686 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ANKLE2Q86XL3 938 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 EPHX4Q8IUS5 362 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 REM2Q8IYK8 340 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 CBARPQ8N350 705 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 OR52K2Q8NGK3 314 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 METTL6Q8TCB7 284 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ASB12Q8WXK4 309 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ZFYVE19Q96K21 471 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 NT5C3AQ9H0P0 336 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ASH2LQ9UBL3 628 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 DNAJB4Q9UDY4 337 aa9.32□□□□□ -0.92
VPS13D-212ENST00000543766 NOC2LQ9Y3T9 749 aaKnown RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 EIF3HO15372 352 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 NDUFS6O75380 124 aaKnown RBP9.32□□□□□ -0.92
VPS13D-212ENST00000543766 ZBED1O96006 694 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms