RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LRRTM3Q86VH5 581 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 PDCL2Q8N4E4 241 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 CSGALNACT2Q8N6G5 542 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 SPATA20Q8TB22 786 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 SPATA18Q8TC71 538 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 ZNF516Q92618 1163 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 FGF13Q92913 245 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 NXPE3Q969Y0 559 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 ANKRD36BP1Q96IX9 119 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 PKMYT1Q99640 499 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 CGRRF1Q99675 332 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 DNAJC25Q9H1X3 360 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 TRAF3IP3Q9Y228 551 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 YIPF1Q9Y548 306 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 GABRDO14764 452 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 MICAL2O94851 1124 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 LRG1P02750 347 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 TMEM191BP0C7N4 346 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 PTPN2P17706 415 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 MCCD1P59942 119 aaPredicted RBP15.28■□□□□ 0.04
USP28-209ENST00000540925 FAM160A1Q05DH4 1040 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 TWF1Q12792 350 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 DUSP4Q13115 394 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 TDGQ13569 410 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 TRAPPC11Q7Z392 1133 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 NPAS3Q8IXF0 933 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 TOP6BLQ8N6T0 577 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 RDH13Q8NBN7 331 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 ATAD1Q8NBU5 361 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 NOC3LQ8WTT2 800 aaKnown RBP15.28■□□□□ 0.04
USP28-209ENST00000540925 RSAD2Q8WXG1 361 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 PGLYRP2Q96PD5 576 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 LRRC3Q9BY71 257 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 DUSP12Q9UNI6 340 aa15.28■□□□□ 0.04
USP28-209ENST00000540925 PRPF40AO75400 957 aaKnown RBP15.27■□□□□ 0.04
USP28-209ENST00000540925 MOSPD3O75425 235 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 TNNC2P02585 160 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 CCR2P41597 374 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 SOWAHAQ2M3V2 549 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 ZCWPW2Q504Y3 356 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 ALYREFQ86V81 257 aaKnown RBP15.27■□□□□ 0.04
USP28-209ENST00000540925 OSTM1Q86WC4 334 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 METTL23Q86XA0 190 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 TMEM86AQ8N2M4 240 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 GUF1Q8N442 669 aaKnown RBP15.27■□□□□ 0.04
USP28-209ENST00000540925 TTC9BQ8N6N2 239 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 PARD3BQ8TEW8 1205 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 TIGD1Q96MW7 591 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 XYLT2Q9H1B5 865 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 POLIQ9UNA4 740 aa15.27■□□□□ 0.04
USP28-209ENST00000540925 ZDBF2Q9HCK1 2354 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 EXOC3O60645 756 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 STAU1O95793 577 aaKnown RBP15.26■□□□□ 0.03
USP28-209ENST00000540925 CST3P01034 146 aaPredicted RBP15.26■□□□□ 0.03
USP28-209ENST00000540925 NR3C1P04150 777 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 KRT19P08727 400 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 DLATP10515 647 aaKnown RBP15.26■□□□□ 0.03
USP28-209ENST00000540925 CASP4P49662 377 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 SMARCB1Q12824 385 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 BFSP1Q12934 665 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 PNOCQ13519 176 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 SLC39A12Q504Y0 691 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 COBLL1Q53SF7 1204 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 DPH6Q7L8W6 267 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 TMC8Q8IU68 726 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 ELOA2Q8IYF1 753 aaPredicted RBP15.26■□□□□ 0.03
USP28-209ENST00000540925 SLC44A3Q8N4M1 653 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 C2orf15Q8WU43 125 aaKnown RBP15.26■□□□□ 0.03
USP28-209ENST00000540925 KBTBD7Q8WVZ9 684 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 FGF14Q92915 247 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 CCDC127Q96BQ5 260 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 TCEAL4Q96EI5 215 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 HPDLQ96IR7 371 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 FNBP1Q96RU3 617 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 ACBD6Q9BR61 282 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 CORO1BQ9BR76 489 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 TMLHEQ9NVH6 421 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 GDE1Q9NZC3 331 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 SLC27A5Q9Y2P5 690 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 SNX9Q9Y5X1 595 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 NUMBLQ9Y6R0 609 aa15.26■□□□□ 0.03
USP28-209ENST00000540925 LRRIQ3A6PVS8 624 aaPredicted RBP15.25■□□□□ 0.03
USP28-209ENST00000540925 MAPK13O15264 365 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 NARSO43776 548 aaKnown RBP15.25■□□□□ 0.03
USP28-209ENST00000540925 HUS1O60921 280 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 CEBPBP17676 345 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 TNNI1P19237 187 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 MYO1EQ12965 1108 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 C1orf220Q5T0J3 134 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 PARM1Q6UWI2 310 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 HS6ST3Q8IZP7 471 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 THEM5Q8N1Q8 247 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 LEMD2Q8NC56 503 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 RPP25Q9BUL9 199 aaKnown RBP15.25■□□□□ 0.03
USP28-209ENST00000540925 VRTNQ9H8Y1 702 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 MRPS23Q9Y3D9 190 aaKnown RBP15.25■□□□□ 0.03
USP28-209ENST00000540925 KMT2EQ8IZD2 1858 aa15.25■□□□□ 0.03
USP28-209ENST00000540925 HCRTO43612 131 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 SOAT2O75908 522 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 KIF20AO95235 890 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms