RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 IKZF4Q9H2S9 585 aa15.29■□□□□ 0.04
SNHG1-213ENST00000540725 C2CD2Q9Y426 696 aa15.29■□□□□ 0.04
SNHG1-213ENST00000540725 CLIC4Q9Y696 253 aa15.29■□□□□ 0.04
SNHG1-213ENST00000540725 ARNTLO00327 626 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 LILRB5O75023 590 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 PTPAQ15257 358 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 SLC39A12Q504Y0 691 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 GAREM2Q75VX8 874 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 ZNF720Q7Z2F6 126 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 DNAJB7Q7Z6W7 309 aaPredicted RBP15.28■□□□□ 0.04
SNHG1-213ENST00000540725 ITIH5Q86UX2 942 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 ARID3BQ8IVW6 561 aaPredicted RBP15.28■□□□□ 0.04
SNHG1-213ENST00000540725 YAF2Q8IY57 180 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 HVCN1Q96D96 273 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 IER2Q9BTL4 223 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 LMAN1LQ9HAT1 526 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 DPP3Q9NY33 737 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 NCDNQ9UBB6 729 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 HSFX1Q9UBD0 423 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 STK17AQ9UEE5 414 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 DSEQ9UL01 958 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 ATG2BQ96BY7 2078 aa15.28■□□□□ 0.04
SNHG1-213ENST00000540725 CYB561D2O14569 222 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CHADO15335 359 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 PPP1R37O75864 691 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 FGF19O95750 216 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 PDCP20941 246 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CCNE1P24864 410 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 GABRR2P28476 465 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 TAF6P49848 677 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 POU5F1Q01860 360 aaKnown RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 FCHO2Q0JRZ9 810 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CUL4AQ13619 759 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CRELD2Q6UXH1 353 aaPredicted RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 METTL23Q86XA0 190 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 GPIHBP1Q8IV16 184 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 EFCAB13Q8IY85 973 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CSGALNACT1Q8TDX6 532 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 POMGNT1Q8WZA1 660 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 SEPT5Q99719 369 aaPredicted RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 LPIN3Q9BQK8 851 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 PYM1Q9BRP8 204 aaKnown RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 MKNK1Q9BUB5 465 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 FAM126AQ9BYI3 521 aaPredicted RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 ZCWPW1Q9H0M4 648 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 EPC1Q9H2F5 836 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 ATXN3LQ9H3M9 355 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 FBXO2Q9UK22 296 aaPredicted RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 SMG5Q9UPR3 1016 aaKnown RBP15.27■□□□□ 0.04
SNHG1-213ENST00000540725 SPAG17Q6Q759 2223 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 SDK1Q7Z5N4 2213 aa15.27■□□□□ 0.04
SNHG1-213ENST00000540725 TPRP12270 2363 aaKnown RBP15.27■□□□□ 0.03
SNHG1-213ENST00000540725 TDGF1P13385 188 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 ADSSP30520 456 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 TUFMP49411 452 aaKnown RBP15.26■□□□□ 0.03
SNHG1-213ENST00000540725 CDR1P51861 262 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MLLT6P55198 1093 aaPredicted RBP15.26■□□□□ 0.03
SNHG1-213ENST00000540725 VEPH1Q14D04 833 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 POSTNQ15063 836 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MGAT5BQ3V5L5 792 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 ARHGAP15Q53QZ3 475 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 GPR158Q5T848 1215 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MAMSTRQ6ZN01 415 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 THEM5Q8N1Q8 247 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 FAM200AQ8TCP9 573 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MSANTD3Q96H12 275 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 STRA6Q9BX79 667 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MRPL44Q9H9J2 332 aaKnown RBP15.26■□□□□ 0.03
SNHG1-213ENST00000540725 SEL1LQ9UBV2 794 aa15.26■□□□□ 0.03
SNHG1-213ENST00000540725 SRPRBQ9Y5M8 271 aaKnown RBP15.26■□□□□ 0.03
SNHG1-213ENST00000540725 MYMKA6NI61 221 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 SLC38A8A6NNN8 435 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 DPYSL4O14531 572 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 IL18RAPO95256 599 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 CHRNB1P11230 501 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 GAP43P17677 238 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 ATF6P18850 670 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 TXLNAP40222 546 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 SOX9P48436 509 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 CCR3P51677 355 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 KPNA1P52294 538 aaPredicted RBP15.25■□□□□ 0.03
SNHG1-213ENST00000540725 KCNA1Q09470 495 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 RRAGBQ5VZM2 374 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 WSCD1Q658N2 575 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 SPPL2BQ8TCT7 592 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 DNAJC19Q96DA6 116 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 CLIC6Q96NY7 704 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 LRRC3BQ96PB8 259 aa15.25■□□□□ 0.03
SNHG1-213ENST00000540725 C8orf33Q9H7E9 229 aaPredicted RBP15.25■□□□□ 0.03
SNHG1-213ENST00000540725 KPNA7A9QM74 516 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 PRAMEF12O95522 483 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 CDC25CP30307 473 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 NRLP54845 237 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 CYP4F8P98187 520 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 SMARCB1Q12824 385 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 RESTQ13127 1097 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 PPP2R5DQ14738 602 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 SV2CQ496J9 727 aa15.24■□□□□ 0.03
SNHG1-213ENST00000540725 ARHGAP29Q52LW3 1261 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms