RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SYMPKQ92797 1274 aaKnown RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 VMP1Q96GC9 406 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 SNF8Q96H20 258 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 FAM161BQ96MY7 647 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ERGIC2Q96RQ1 377 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 HERC5Q9UII4 1024 aaKnown RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PCDHGB4Q9UN71 923 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PCDHGB5Q9Y5G0 923 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 CASZ1Q86V15 1759 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 MYOCOSA0A1B0GUC4 107 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 LRRC53A6NM62 1247 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RBAK-RBAKDNI3L0D1 243 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ALOX15BO15296 676 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ATMINO43313 823 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PHF2O75151 1096 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PEX14O75381 377 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RAP1GDS1P52306 607 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PDE4DQ08499 809 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 APOFQ13790 326 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 EDRF1Q3B7T1 1238 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 HERC4Q5GLZ8 1057 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ARHGEF18Q6ZSZ5 1173 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CYP4V2Q6ZWL3 525 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 TMC7Q7Z402 723 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PEX26Q7Z412 305 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 NET1Q7Z628 596 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 METTL13Q8N6R0 699 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ATP6V0D2Q8N8Y2 350 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 TOR1AIP2Q8NFQ8 470 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ANKS1AQ92625 1134 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 DSCC1Q9BVC3 393 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CALN1Q9BXU9 219 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 SHCBP1LQ9BZQ2 653 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FAM207AQ9NSI2 230 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 STK39Q9UEW8 545 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 TRMT112Q9UI30 125 aaKnown RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 NEU2Q9Y3R4 380 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 GOLGA8IPA6NC78 632 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RSPH10B2B2RC85 870 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 SULT1C4O75897 302 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RSL1D1O76021 490 aaKnown RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RSPH10BP0C881 870 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RBP3P10745 1247 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RARGP13631 454 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 NAGAP17050 411 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PGM1P36871 562 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CDK9P50750 372 aaKnown RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 SCNN1DP51172 638 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 HIRAP54198 1017 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CASP7P55210 303 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FOLH1Q04609 750 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 TLR1Q15399 786 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 KYNUQ16719 465 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF829Q3KNS6 432 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CCDC14Q49A88 953 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 MIIPQ5JXC2 388 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 SUSD4Q5VX71 490 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 GALNT4Q8N4A0 578 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 CRACR2BQ8N4Y2 399 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ZBTB38Q8NAP3 1195 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FAM172AQ8WUF8 416 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 DPF3Q92784 378 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 SGF29Q96ES7 293 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FAM89AQ96GI7 184 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 TRIM47Q96LD4 638 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FAM20AQ96MK3 541 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 ACAP3Q96P50 834 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 PANX3Q96QZ0 392 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 FANCEQ9HB96 536 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 DDX56Q9NY93 547 aaKnown RBP9.94□□□□□ -0.82
CLIP1-214ENST00000540539 HMGXB4Q9UGU5 601 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 DSEQ9UL01 958 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 RABGAP1Q9Y3P9 1069 aa9.94□□□□□ -0.82
CLIP1-214ENST00000540539 KRBA1A5PL33 1030 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NKRFO15226 690 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 MAGEB2O15479 319 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SPAG7O75391 227 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 PCCAP05165 728 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 C6orf222P0C671 652 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 THRAP10827 490 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 PEX2P28328 305 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 LIFRP42702 1097 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 C21orf59P57076 290 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 WDR4P57081 412 aaKnown RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NUP107P57740 925 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 HSPA14Q0VDF9 509 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 PSMD6Q15008 389 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 CYP4A22Q5TCH4 519 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RRAGAQ7L523 313 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 DHDDSQ86SQ9 333 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF598Q86UK7 904 aaKnown RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 KSR1Q8IVT5 923 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SUCLG2Q96I99 432 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 CDHR1Q96JP9 859 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 PHF20Q9BVI0 1012 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 CDH19Q9H159 772 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 MARCH7Q9H992 704 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 UBN1Q9NPG3 1134 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 GPR108Q9NPR9 543 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NKIRAS1Q9NYS0 192 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms