RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 GALNTL6Q49A17 601 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 GLIS1Q8NBF1 620 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 ZNF483Q8TF39 744 aaPredicted RBP13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 NKIRAS1Q9NYS0 192 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 ZNF112Q9UJU3 913 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 ANAPC5Q9UJX4 755 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 NEU2Q9Y3R4 380 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 LCTP09848 1927 aa13.3□□□□□ -0.28
SFSWAP-208ENST00000539506 NFASCO94856 1347 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 DPPA5A6NC42 116 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 WDR4P57081 412 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 CNTN2Q02246 1040 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 KLF1Q13351 362 aaPredicted RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 FASTKD3Q14CZ7 662 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 GSTA5Q7RTV2 222 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 DTX3LQ8TDB6 740 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 CKAP2Q8WWK9 683 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 C11orf70Q9BRQ4 267 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 TMEM109Q9BVC6 243 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 TARS2Q9BW92 718 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 PPP1R12CQ9BZL4 782 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 DCLK3Q9C098 648 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 ARHGEF3Q9NR81 526 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 NINJ2Q9NZG7 142 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 PIM2Q9P1W9 311 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 AGO2Q9UKV8 859 aaKnown RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 NUB1Q9Y5A7 615 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 C2orf71A6NGG8 1288 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 ZC3H11AO75152 810 aaKnown RBP eCLIP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 SUPT20HL2P0C7V6 817 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 RALAP11233 206 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 CCND1P24385 295 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 PTP4A2Q12974 167 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 MAMLD1Q13495 774 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 SUPT20HL1Q3ZLR7 823 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 ATP13A4Q4VNC1 1196 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 MIS18BP1Q6P0N0 1132 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 TMEM270Q6UE05 265 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 ARMC2Q8NEN0 867 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 AVENQ9NQS1 362 aaPredicted RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 RGS17Q9UGC6 210 aaPredicted RBP13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 PARP2Q9UGN5 583 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 FBXO40Q9UH90 709 aa13.29□□□□□ -0.28
SFSWAP-208ENST00000539506 OAS1P00973 400 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 LINGO3P0C6S8 592 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CD58P19256 250 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 TAC1P20366 129 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PIK3CAP42336 1068 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 SATB1Q01826 763 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 ENOSF1Q7L5Y1 443 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 NAF1Q96HR8 494 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 IFT74Q96LB3 600 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 RXFP1Q9HBX9 757 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 MAFBQ9Y5Q3 323 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CNTNAP2Q9UHC6 1331 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PPP1R12AO14974 1030 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 SMNDC1O75940 238 aaKnown RBP eCLIP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 FDX1P10109 184 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 KRT15P19012 456 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 POLGP54098 1239 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 NOMO3P69849 1222 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CUL2Q13617 745 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 XKR3Q5GH77 459 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 RFWD3Q6PCD5 774 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 NUDCD1Q96RS6 583 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 FNBP1Q96RU3 617 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PCYT2Q99447 389 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PORCNQ9H237 461 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 GINM1Q9NU53 330 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 WHRNQ9P202 907 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 GRID1Q9ULK0 1009 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 GJA3Q9Y6H8 435 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PHIPQ8WWQ0 1821 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 DOCK1Q14185 1865 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 PROSCO94903 275 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 TTC4O95801 387 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CST3P01034 146 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 NSFP46459 744 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 DLK2Q6UY11 383 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CATSPERGQ6ZRH7 1159 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 MAB21L3Q8N8X9 362 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 DHX33Q9H6R0 707 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 RBAKQ9NYW8 714 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 ANKFY1Q9P2R3 1169 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 CHKBQ9Y259 395 aa13.28□□□□□ -0.28
SFSWAP-208ENST00000539506 ADGRA2Q96PE1 1338 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 A0A1W2PPM1 405 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 LRRIQ4A6NIV6 560 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 KRT10P13645 584 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 GBP1P32455 592 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 ARL2P36404 184 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 RPL7AP62424 266 aaKnown RBP13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 USP37Q86T82 979 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 ABRAQ8N0Z2 381 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 R3HDMLQ9H3Y0 253 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 NUMBLQ9Y6R0 609 aa13.27□□□□□ -0.28
SFSWAP-208ENST00000539506 SPDYE16A6NNV3 312 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 ATG7O95352 703 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 ITGBL1O95965 494 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 ATF2P15336 505 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms