RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CXADRP78310 365 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ZNF33AQ06730 810 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 CAPSQ13938 189 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 MRPL58Q14197 206 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 Q4G0T1 1027 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 EOGTQ5NDL2 527 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 RNF19BQ6ZMZ0 732 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 DNAJB7Q7Z6W7 309 aaPredicted RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 C4orf19Q8IY42 314 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 RGL4Q8IZJ4 473 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ATP2A3Q93084 1043 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 PSMG2Q969U7 264 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 POLR3CQ9BUI4 534 aaPredicted RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 FBRSL1Q9HCM7 1045 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 EML5Q05BV3 1969 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 THADAQ6YHU6 1953 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ITPR1Q14643 2758 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ENO4A6NNW6 628 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 PYCARD-AS1I3L0S3 204 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 CAMK2BQ13554 666 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 SUZ12Q15022 739 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 GLRA4Q5JXX5 417 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 BROXQ5VW32 411 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 GAREM2Q75VX8 874 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 CMTM8Q8IZV2 173 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 CCDC33Q8N5R6 958 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ZNF579Q8NAF0 562 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 CCDC148Q8NFR7 591 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 PPP1R10Q96QC0 940 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 ECT2Q9H8V3 914 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 DNMT3LQ9UJW3 386 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 AK5Q9Y6K8 562 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 LRRIQ4A6NIV6 560 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 CBFA2T3O75081 653 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 GJB3O75712 270 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 CER1O95813 267 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 RPL9P32969 192 aaKnown RBP10.04□□□□□ -0.8
USP28-205ENST00000537706 MCM4P33991 863 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 HNF1BP35680 557 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 CYP4F8P98187 520 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 PRPF4BQ13523 1007 aaKnown RBP10.04□□□□□ -0.8
USP28-205ENST00000537706 PFKFB3Q16875 520 aaPredicted RBP10.04□□□□□ -0.8
USP28-205ENST00000537706 MAP7D1Q3KQU3 841 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 COLEC12Q5KU26 742 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 WDR45BQ5MNZ6 344 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 RHBDD1Q8TEB9 315 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 HMGB4Q8WW32 186 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 GJA10Q969M2 543 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 LNPKQ9C0E8 428 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 C2orf40Q9H1Z8 148 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 PRDM16Q9HAZ2 1276 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 TOPORSQ9NS56 1045 aaPredicted RBP10.04□□□□□ -0.8
USP28-205ENST00000537706 IL17BQ9UHF5 180 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 ACACAQ13085 2346 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 NBEAQ8NFP9 2946 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 ASXL3Q9C0F0 2248 aa10.04□□□□□ -0.8
USP28-205ENST00000537706 OR6C75A6NL08 312 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 FLRT2O43155 660 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 ZBTB43O43298 467 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DGAT1O75907 488 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 ZNF883P0CG24 379 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 AKAP17AQ02040 695 aaKnown RBP10.03□□□□□ -0.8
USP28-205ENST00000537706 SEMG2Q02383 582 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DUSP4Q13115 394 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 IL27RAQ6UWB1 636 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 B3GNT9Q6UX72 402 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 CD300LGQ6UXG3 332 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 PRICKLE2Q7Z3G6 844 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 USP37Q86T82 979 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 NOSTRINQ8IVI9 506 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 BEST2Q8NFU1 509 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 ASAP3Q8TDY4 903 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 SUSD3Q96L08 255 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 SMG9Q9H0W8 520 aaKnown RBP10.03□□□□□ -0.8
USP28-205ENST00000537706 DNAJC25Q9H1X3 360 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 PDZD7Q9H5P4 517 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 ZSWIM4Q9H7M6 989 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 TDP1Q9NUW8 608 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DUS2Q9NX74 493 aaKnown RBP10.03□□□□□ -0.8
USP28-205ENST00000537706 UNC79Q9P2D8 2635 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 GOLGA8AA7E2F4 631 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 GOLGA8BA8MQT2 603 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 ATXN1LP0C7T5 689 aaKnown RBP10.03□□□□□ -0.8
USP28-205ENST00000537706 UCNP55089 124 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 YWHAHQ04917 246 aaPredicted RBP10.03□□□□□ -0.8
USP28-205ENST00000537706 FAM187BQ17R55 369 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 SGMS1Q86VZ5 419 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 TMPRSS12Q86WS5 348 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DEFB119Q8N690 84 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 C3orf58Q8NDZ4 430 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DDX12PQ92771 950 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 PGLYRP2Q96PD5 576 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 LXNQ9BS40 222 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 OSBPL3Q9H4L5 887 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 GOLGA2P5Q9HBQ8 144 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 PCDHB8Q9UN66 801 aa10.03□□□□□ -0.8
USP28-205ENST00000537706 DMXL2Q8TDJ6 3036 aa10.02□□□□□ -0.8
USP28-205ENST00000537706 FAM149AA5PLN7 773 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 OTOL1A6NHN0 477 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms