RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	PPP4R3A	Q6IN85	833 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	GPR149	Q86SP6	731 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	PNMA8A	Q86V59	439 aa	Predicted RBP	5.66	□□□□□ -1.5
ATM-223	ENST00000533979	TEX19	Q8NA77	164 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	ASB10	Q8WXI3	467 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	COA7	Q96BR5	231 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	HSPBAP1	Q96EW2	488 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	LRGUK	Q96M69	825 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	C11orf54	Q9H0W9	315 aa	Predicted RBP	5.66	□□□□□ -1.5
ATM-223	ENST00000533979	SYNPO2L	Q9H987	977 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	TDP1	Q9NUW8	608 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	KCNE5	Q9UJ90	142 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	HECW2	Q9P2P5	1572 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	MAST3	O60307	1309 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	HTRA2	O43464	458 aa	Predicted RBP	5.65	□□□□□ -1.5
ATM-223	ENST00000533979	PIP5K1C	O60331	668 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	RPLP2	P05387	115 aa	Known RBP	5.65	□□□□□ -1.5
ATM-223	ENST00000533979	MTHFD1	P11586	935 aa	Known RBP	5.65	□□□□□ -1.5
ATM-223	ENST00000533979	EDNRB	P24530	442 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CHAF1A	Q13111	956 aa	Predicted RBP	5.65	□□□□□ -1.5
ATM-223	ENST00000533979	ODF1	Q14990	250 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CYP2A13	Q16696	494 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CCDC70	Q6NSX1	233 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	MIGA2	Q7L4E1	593 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	RSPH3	Q86UC2	560 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	NACC2	Q96BF6	587 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CRAMP1	Q96RY5	1269 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	ZSWIM1	Q9BR11	485 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	RIOX1	Q9H6W3	641 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	NMRK2	Q9NPI5	230 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	NLRC4	Q9NPP4	1024 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	C1orf112	Q9NSG2	853 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	TBCCD1	Q9NVR7	557 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CALCOCO1	Q9P1Z2	691 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	ZNHIT2	Q9UHR6	403 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	GTF2A1L	Q9UNN4	478 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	LIMCH1	Q9UPQ0	1083 aa		5.65	□□□□□ -1.5
ATM-223	ENST00000533979	RUVBL1	Q9Y265	456 aa	Known RBP	5.65	□□□□□ -1.5
ATM-223	ENST00000533979	CCDC78	A2IDD5	438 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	CFAP69	A5D8W1	941 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ZAR1L	A6NP61	321 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	NBN	O60934	754 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ERN1	O75460	977 aa	Known RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	NUDT3	O95989	172 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ITGAM	P11215	1152 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	HSPA6	P17066	643 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	TYRP1	P17643	537 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	PPM1F	P49593	454 aa	Predicted RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	NOMO3	P69849	1222 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	HSD11B2	P80365	405 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	TARDBP	Q13148	414 aa	Known RBP eCLIP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	STK3	Q13188	491 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	MPP3	Q13368	585 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	RAB39A	Q14964	217 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ERCC6L	Q2NKX8	1250 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	PABPC1L	Q4VXU2	614 aa	Known RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	NOMO2	Q5JPE7	1267 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	XRRA1	Q6P2D8	792 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	C1orf228	Q6PIY5	440 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	B3GNT9	Q6UX72	402 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	CHST15	Q7LFX5	561 aa	Predicted RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	COLGALT2	Q8IYK4	626 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979		Q8NA96	180 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	IFI44	Q8TCB0	444 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	PARD3B	Q8TEW8	1205 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	MRGPRX4	Q96LA9	322 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	DMRTA2	Q96SC8	542 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	SLC12A5	Q9H2X9	1139 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ZHX3	Q9H4I2	956 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	AS3MT	Q9HBK9	375 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	MTO1	Q9Y2Z2	717 aa	Known RBP	5.64	□□□□□ -1.51
ATM-223	ENST00000533979	PCDHB1	Q9Y5F3	818 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	AATK	Q6ZMQ8	1374 aa		5.64	□□□□□ -1.51
ATM-223	ENST00000533979	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	KIAA0391	O15091	583 aa	Known RBP	5.63	□□□□□ -1.51
ATM-223	ENST00000533979	SLC43A1	O75387	559 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	IL33	O95760	270 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	HSP90AA1	P07900	732 aa	Known RBP	5.63	□□□□□ -1.51
ATM-223	ENST00000533979	FAM163B	P0C2L3	166 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	PRR16	Q569H4	304 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	SP5	Q6BEB4	398 aa	Predicted RBP	5.63	□□□□□ -1.51
ATM-223	ENST00000533979	TBC1D15	Q8TC07	691 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	TNIP3	Q96KP6	325 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	TEKT5	Q96M29	485 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979		Q96MF0	132 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	PAGR1	Q9BTK6	254 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	INO80B	Q9C086	356 aa	Predicted RBP	5.63	□□□□□ -1.51
ATM-223	ENST00000533979	DMTF1	Q9Y222	760 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	MRC2	Q9UBG0	1479 aa		5.63	□□□□□ -1.51
ATM-223	ENST00000533979	CCDC154	A6NI56	674 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	EXOC5	O00471	708 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	XPOT	O43592	962 aa	Known RBP	5.62	□□□□□ -1.51
ATM-223	ENST00000533979	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.62	□□□□□ -1.51
ATM-223	ENST00000533979	SRGN	P10124	158 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	RHCE	P18577	417 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	FDXR	P22570	491 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	VAV2	P52735	878 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	AK2	P54819	239 aa		5.62	□□□□□ -1.51
ATM-223	ENST00000533979	ADK	P55263	362 aa	Known RBP	5.62	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 87 ms