RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 P4HBP07237 508 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 BCKDHBP21953 392 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 GLRA2P23416 452 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 MAPK8P45983 427 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 RPIAP49247 311 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 MCM2P49736 904 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 RCAN1P53805 252 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 IRX4P78413 519 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 KCNH2Q12809 1159 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 GRSF1Q12849 480 aaKnown RBP eCLIP9.05□□□□□ -0.96
CD44-232ENST00000531118 LMAN2Q12907 356 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 ITPRIPL2Q3MIP1 535 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 TRIM61Q5EBN2 209 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 XKR9Q5GH70 373 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 TPGS2Q68CL5 300 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 C11orf74Q86VG3 221 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 ARID3BQ8IVW6 561 aaPredicted RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 C4orf19Q8IY42 314 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 HNRNPLLQ8WVV9 542 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 ACDQ96AP0 544 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 LRIG1Q96JA1 1093 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 PRIMPOLQ96LW4 560 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 UROC1Q96N76 676 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 PPP1R10Q96QC0 940 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 LRRC3Q9BY71 257 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 TPSD1Q9BZJ3 242 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 CCDC86Q9H6F5 360 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 EBF1Q9UH73 591 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 AFF4Q9UHB7 1163 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 FBXL5Q9UKA1 691 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 RAXQ9Y2V3 346 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 UNC79Q9P2D8 2635 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 MUC22E2RYF6 1773 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 CYP3A7-CYP3A51PA0A087WV96 503 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 UPK3BL1B0FP48 263 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 UPK3BL2E5RIL1 263 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 SYN3O14994 580 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 N4BP3O15049 544 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 MEFVO15553 781 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 ZBTB24O43167 697 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 PLA2G2AP14555 144 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 CYP3A7P24462 503 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 FAM193AP78312 1265 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 C19orf57Q0VDD7 668 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 SEMA3BQ13214 749 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 DMC1Q14565 340 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 UPP1Q16831 310 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 ZNF423Q2M1K9 1284 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 CREB3L3Q68CJ9 461 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 CDCA2Q69YH5 1023 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 ZNF280DQ6N043 979 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 MOXD1Q6UVY6 613 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 RPLP0P6Q8NHW5 317 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 MDM1Q8TC05 714 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 BPIFB1Q8TDL5 484 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 PIGKQ92643 395 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 LSG1Q9H089 658 aaKnown RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 POLR3FQ9H1D9 316 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 DNAJC25Q9H1X3 360 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 PRMT7Q9NVM4 692 aaPredicted RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 VPS54Q9P1Q0 977 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 DDX25Q9UHL0 483 aaKnown RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 COL6A6A6NMZ7 2263 aa9.04□□□□□ -0.96
CD44-232ENST00000531118 ATXN2Q99700 1313 aaKnown RBP9.04□□□□□ -0.96
CD44-232ENST00000531118 HELZP42694 1942 aaKnown RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 LRRIQ4A6NIV6 560 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 H7C4K7 107 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 PODXLO00592 558 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 TRDMT1O14717 391 aaKnown RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 CPB1P15086 417 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 ENGP17813 658 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 RDXP35241 583 aaKnown RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 ADD1P35611 737 aaKnown RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 ARL2P36404 184 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 DHPSP49366 369 aaPredicted RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 DGKEP52429 567 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 CYP4A11Q02928 519 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 SOX4Q06945 474 aaPredicted RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 PLD1Q13393 1074 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 CTXN3Q4LDR2 81 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 SYT13Q7L8C5 426 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 OTUD6AQ7L8S5 288 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 NOSTRINQ8IVI9 506 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 TSTD1Q8NFU3 115 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 DYDC2Q96IM9 177 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 UBL7Q96S82 380 aaPredicted RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 POLR3CQ9BUI4 534 aaPredicted RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 NUSAP1Q9BXS6 441 aaKnown RBP9.03□□□□□ -0.96
CD44-232ENST00000531118 C22orf23Q9BZE7 217 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 KCNMB3Q9NPA1 279 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 HPS4Q9NQG7 708 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 INVSQ9Y283 1065 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 GDAQ9Y2T3 454 aa9.03□□□□□ -0.96
CD44-232ENST00000531118 ANK1P16157 1881 aa9.02□□□□□ -0.96
CD44-232ENST00000531118 ZBTB39O15060 712 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 PRPF3O43395 683 aaKnown RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 DGAT1O75907 488 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 VNN2O95498 520 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 EDN1P05305 212 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 CYP4F8P98187 520 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms