RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TUBB2AQ13885 445 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 ECHDC2Q86YB7 292 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 NPAS4Q8IUM7 802 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 SLC35F6Q8N357 371 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 CTNNBL1Q8WYA6 563 aaPredicted RBP22.61■■□□□ 1.21
VPS28-212ENST00000530836 TUBB2BQ9BVA1 445 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 ELAC1Q9H777 363 aaKnown RBP22.61■■□□□ 1.21
VPS28-212ENST00000530836 TFR2Q9UP52 801 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 DUSP10Q9Y6W6 482 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 TRIOBPQ9H2D6 2365 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 ANO9A1A5B4 782 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 MMEP08473 750 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 SCARA3Q6AZY7 606 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 ZNF560Q96MR9 790 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 TMEM161AQ9NX61 479 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 PCDHB7Q9Y5E2 793 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 EOMESO95936 686 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 SMAD3P84022 425 aaKnown RBP22.6■■□□□ 1.21
VPS28-212ENST00000530836 TAF3Q5VWG9 929 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 C9orf57Q5W0N0 161 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 FAM117BQ6P1L5 589 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 ZNF598Q86UK7 904 aaKnown RBP22.6■■□□□ 1.21
VPS28-212ENST00000530836 RPS6KC1Q96S38 1066 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 NAPGQ99747 312 aaPredicted RBP22.6■■□□□ 1.21
VPS28-212ENST00000530836 ZBED2Q9BTP6 218 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 PACSIN1Q9BY11 444 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 KLK14Q9P0G3 267 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 TUBGCP4Q9UGJ1 667 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 LRFN2Q9ULH4 789 aa22.6■■□□□ 1.21
VPS28-212ENST00000530836 PAEPP09466 180 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 WEE2P0C1S8 567 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 GUCY2FP51841 1108 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 RABGGTBP53611 331 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 TERF1P54274 439 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 GALCP54803 685 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 GLRA4Q5JXX5 417 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 RAD9AQ99638 391 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 PDCL3Q9H2J4 239 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 MICAL3Q7RTP6 2002 aa22.59■■□□□ 1.21
VPS28-212ENST00000530836 PIRO00625 290 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 CD58P19256 250 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 IBSPP21815 317 aaPredicted RBP22.58■■□□□ 1.21
VPS28-212ENST00000530836 LRPAP1P30533 357 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 NAP1L1P55209 391 aaKnown RBP22.58■■□□□ 1.21
VPS28-212ENST00000530836 HABP4Q5JVS0 413 aaKnown RBP22.58■■□□□ 1.21
VPS28-212ENST00000530836 SCARA5Q6ZMJ2 495 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 C18orf25Q96B23 403 aaPredicted RBP22.58■■□□□ 1.21
VPS28-212ENST00000530836 PPP1R10Q96QC0 940 aaKnown RBP22.58■■□□□ 1.21
VPS28-212ENST00000530836 ACP6Q9NPH0 428 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 POLIQ9UNA4 740 aa22.58■■□□□ 1.21
VPS28-212ENST00000530836 TLL1O43897 1013 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 DGKIO75912 1065 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 FTLP02792 175 aaPredicted RBP22.57■■□□□ 1.2
VPS28-212ENST00000530836 HTRA4P83105 476 aaPredicted RBP22.57■■□□□ 1.2
VPS28-212ENST00000530836 INCA1Q0VD86 236 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 CLEC16AQ2KHT3 1053 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 ACAD10Q6JQN1 1059 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 RHOT2Q8IXI1 618 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 RFFLQ8WZ73 363 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 TRIM11Q96F44 468 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 PCDHB18PQ96TA0 734 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 PBX4Q9BYU1 374 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 CXCL16Q9H2A7 254 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 JRKLQ9Y4A0 524 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 INSL6Q9Y581 213 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 PCDHA11Q9Y5I1 949 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 TTC3P53804 2025 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 PDCD11Q14690 1871 aaKnown RBP22.57■■□□□ 1.2
VPS28-212ENST00000530836 PTGESO14684 152 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 THAP12O43422 761 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 MED7O43513 233 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 THP07101 528 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 TCEAL1Q15170 157 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 PALB2Q86YC2 1186 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 DNAI2Q9GZS0 605 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 L2HGDHQ9H9P8 463 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 BARX2Q9UMQ3 279 aaPredicted RBP22.57■■□□□ 1.2
VPS28-212ENST00000530836 PCDHGC5Q9Y5F6 944 aa22.57■■□□□ 1.2
VPS28-212ENST00000530836 NCANO14594 1321 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 TMCO5BA8MYB1 307 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 FANCGO15287 622 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 CILPO75339 1184 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 URI1O94763 535 aaPredicted RBP22.56■■□□□ 1.2
VPS28-212ENST00000530836 MOCS3O95396 460 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 LSM8O95777 96 aaKnown RBP22.56■■□□□ 1.2
VPS28-212ENST00000530836 CYP1A1P04798 512 aaPredicted RBP22.56■■□□□ 1.2
VPS28-212ENST00000530836 PBX2P40425 430 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 TAF6P49848 677 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 GPC5P78333 572 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 RAB30Q15771 203 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 SV2CQ496J9 727 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 RNF169Q8NCN4 708 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 ZNF606Q8WXB4 792 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 ZNF689Q96CS4 500 aaPredicted RBP22.56■■□□□ 1.2
VPS28-212ENST00000530836 MMS19Q96T76 1030 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 SMYD3Q9H7B4 428 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 RSAD1Q9HA92 442 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 GDAP2Q9NXN4 497 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 TAS2R14Q9NYV8 317 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 MSRAQ9UJ68 235 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms