RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PRDM10Q9NQV6 1147 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 HMGXB4Q9UGU5 601 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 SALL4Q9UJQ4 1053 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 PCDHB7Q9Y5E2 793 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 PDCD11Q14690 1871 aaKnown RBP22.39■■□□□ 1.18
VPS28-208ENST00000527797 A0A0A6YYK5 440 aaPredicted RBP22.39■■□□□ 1.17
VPS28-208ENST00000527797 CASTOR2A6NHX0 329 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 PPP1R2P3Q6NXS1 205 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 DPH6Q7L8W6 267 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 DEFB128Q7Z7B8 93 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 UNC93AQ86WB7 457 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 TOP6BLQ8N6T0 577 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 TRIM58Q8NG06 486 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 TFAP2BQ92481 460 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 HEXIM2Q96MH2 286 aaKnown RBP22.39■■□□□ 1.17
VPS28-208ENST00000527797 UROC1Q96N76 676 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 ALS2CR12Q96Q35 445 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 MCOLN1Q9GZU1 580 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 THAP2Q9H0W7 228 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 KANSL3Q9P2N6 904 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 KIAA1257Q9ULG3 409 aa22.39■■□□□ 1.17
VPS28-208ENST00000527797 BUB1O43683 1085 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 CFHP08603 1231 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 FAM163BP0C2L3 166 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 VDRP11473 427 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 RFC2P35250 354 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 ORC1Q13415 861 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 IFI16Q16666 785 aaKnown RBP22.38■■□□□ 1.17
VPS28-208ENST00000527797 UPP1Q16831 310 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 TCTN1Q2MV58 587 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 NOMO2Q5JPE7 1267 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 CLLU1OSQ5K130 101 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 NAA35Q5VZE5 725 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 LIMS2Q7Z4I7 341 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 OR6B3Q8NGW1 331 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 ZSWIM1Q9BR11 485 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 CACNG4Q9UBN1 327 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 LRFN2Q9ULH4 789 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 PCDHGC3Q9UN70 934 aa22.38■■□□□ 1.17
VPS28-208ENST00000527797 CEP350Q5VT06 3117 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 FAM170AA1A519 330 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 CYB561D2O14569 222 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 FGFR1P11362 822 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 NOP2P46087 812 aaKnown RBP22.37■■□□□ 1.17
VPS28-208ENST00000527797 NSFP46459 744 aaKnown RBP22.37■■□□□ 1.17
VPS28-208ENST00000527797 GPC5P78333 572 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 CENPCQ03188 943 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 PASD1Q8IV76 773 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 CPA5Q8WXQ8 436 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 DNAI2Q9GZS0 605 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 SNX25Q9H3E2 840 aa22.37■■□□□ 1.17
VPS28-208ENST00000527797 RNF216Q9NWF9 866 aaPredicted RBP22.37■■□□□ 1.17
VPS28-208ENST00000527797 NCANO14594 1321 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 FANCGO15287 622 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 LSM8O95777 96 aaKnown RBP22.36■■□□□ 1.17
VPS28-208ENST00000527797 PAX3P23760 479 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 SSTR3P32745 418 aaPredicted RBP22.36■■□□□ 1.17
VPS28-208ENST00000527797 GNL1P36915 607 aaPredicted RBP22.36■■□□□ 1.17
VPS28-208ENST00000527797 NOMO3P69849 1222 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 RFFLQ8WZ73 363 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 L1RE1Q9UN81 338 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 CEP83Q9Y592 693 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 CAPN6Q9Y6Q1 641 aa22.36■■□□□ 1.17
VPS28-208ENST00000527797 CTAGE9A4FU28 777 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 A8MXQ7 604 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 SGO2Q562F6 1265 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 DSTYKQ6XUX3 929 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 ADGRF2Q8IZF7 708 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 ABI1Q8IZP0 508 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 TMEM35BQ8NCS4 154 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 KBTBD7Q8WVZ9 684 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 TRIM11Q96F44 468 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 SENP8Q96LD8 212 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 NAPGQ99747 312 aaPredicted RBP22.35■■□□□ 1.17
VPS28-208ENST00000527797 ZNF518BQ9C0D4 1074 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.35■■□□□ 1.17
VPS28-208ENST00000527797 HOXA2O43364 376 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 WARSP23381 471 aaKnown RBP22.35■■□□□ 1.17
VPS28-208ENST00000527797 CNGA2Q16280 664 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 CNKSR3Q6P9H4 555 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 RHOT2Q8IXI1 618 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 MCOLN2Q8IZK6 566 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 PDCL2Q8N4E4 241 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 C3orf58Q8NDZ4 430 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 SLC35G2Q8TBE7 412 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 RABGGTAQ92696 567 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 ARHGEF26Q96DR7 871 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 FAM193BQ96PV7 902 aaPredicted RBP22.35■■□□□ 1.17
VPS28-208ENST00000527797 PAAF1Q9BRP4 392 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 LHX5Q9H2C1 402 aa22.35■■□□□ 1.17
VPS28-208ENST00000527797 SCN1AP35498 2009 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 B3GAT3O94766 335 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 TIMP1P01033 207 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 MYBL1P10243 752 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 IGFBP6P24592 240 aaPredicted RBP22.34■■□□□ 1.17
VPS28-208ENST00000527797 RNASELQ05823 741 aaKnown RBP22.34■■□□□ 1.17
VPS28-208ENST00000527797 IKBKEQ14164 716 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 STILQ15468 1287 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 DCLRE1AQ6PJP8 1040 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 PHF13Q86YI8 300 aaPredicted RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms