RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TCEAL5Q5H9L2 206 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 KIAA0319Q5VV43 1072 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 RBM23Q86U06 439 aaKnown RBP16.42■□□□□ 0.22
LSM1-203ENST00000520755 MRPL43Q8N983 215 aaKnown RBP16.42■□□□□ 0.22
LSM1-203ENST00000520755 KAT5Q92993 513 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 ARID3AQ99856 593 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 FAM207AQ9NSI2 230 aaPredicted RBP16.42■□□□□ 0.22
LSM1-203ENST00000520755 APEX2Q9UBZ4 518 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 SSX2IPQ9Y2D8 614 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 SNX9Q9Y5X1 595 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 FHOD1Q9Y613 1164 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 CYB561D2O14569 222 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 SYN3O14994 580 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 TPM3P06753 285 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 CETN1Q12798 172 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 PSMD5Q16401 504 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 SGSM1Q2NKQ1 1148 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 VARS2Q5ST30 1063 aaKnown RBP16.41■□□□□ 0.22
LSM1-203ENST00000520755 KLHDC7AQ5VTJ3 777 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 IQCEQ6IPM2 695 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 APPL2Q8NEU8 664 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 PPM1EQ8WY54 764 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 TAF4BQ92750 862 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 PPP2R3CQ969Q6 453 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 KREMEN1Q96MU8 473 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 NT5C1BQ96P26 610 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 NAA15Q9BXJ9 866 aaKnown RBP16.41■□□□□ 0.22
LSM1-203ENST00000520755 NIF3L1Q9GZT8 377 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 SDCBP2Q9H190 292 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 TLE6Q9H808 572 aa16.41■□□□□ 0.22
LSM1-203ENST00000520755 REV3LO60673 3130 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 RNF225M0QZC1 329 aaPredicted RBP16.4■□□□□ 0.22
LSM1-203ENST00000520755 PER2O15055 1255 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 LILRB3O75022 631 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 RPL17P18621 184 aaKnown RBP16.4■□□□□ 0.22
LSM1-203ENST00000520755 CDC25BP30305 580 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 NRIP1P48552 1158 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 ZNF667Q5HYK9 610 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 SCARA5Q6ZMJ2 495 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 LIMS2Q7Z4I7 341 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 GLYCTKQ8IVS8 523 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 UBR7Q8N806 425 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 LNX1Q8TBB1 728 aaPredicted RBP16.4■□□□□ 0.22
LSM1-203ENST00000520755 PIK3R5Q8WYR1 880 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 EMILIN2Q9BXX0 1053 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 BCO2Q9BYV7 579 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 GPR88Q9GZN0 384 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 IGFLR1Q9H665 355 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 SMYD3Q9H7B4 428 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 GDAP2Q9NXN4 497 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 NXF1Q9UBU9 619 aaKnown RBP16.4■□□□□ 0.22
LSM1-203ENST00000520755 IRAK3Q9Y616 596 aa16.4■□□□□ 0.22
LSM1-203ENST00000520755 ARHGEF37A1IGU5 675 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 HUS1O60921 280 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 GYPCP04921 128 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 CNPP09543 421 aaKnown RBP16.39■□□□□ 0.21
LSM1-203ENST00000520755 UCHL3P15374 230 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.21
LSM1-203ENST00000520755 RAP1GAPP47736 663 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 TNNC1P63316 161 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 GCNT1Q02742 428 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 YWHAHQ04917 246 aaPredicted RBP16.39■□□□□ 0.21
LSM1-203ENST00000520755 TBX2Q13207 712 aaPredicted RBP16.39■□□□□ 0.21
LSM1-203ENST00000520755 WDR72Q3MJ13 1102 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 WSCD1Q658N2 575 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 SPECC1LQ69YQ0 1117 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 PDXDC1Q6P996 788 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 ANKS3Q6ZW76 656 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 RRAGAQ7L523 313 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 TMC6Q7Z403 805 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 METTL23Q86XA0 190 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 PPM1KQ8N3J5 372 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 CCDC150Q8NCX0 1101 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 PCMTD1Q96MG8 357 aaPredicted RBP16.39■□□□□ 0.21
LSM1-203ENST00000520755 KLHL5Q96PQ7 755 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 MMS19Q96T76 1030 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 IMPG2Q9BZV3 1241 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.39■□□□□ 0.21
LSM1-203ENST00000520755 FBXL5Q9UKA1 691 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 DSEQ9UL01 958 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 NME7Q9Y5B8 376 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 EYSQ5T1H1 3165 aa16.39■□□□□ 0.21
LSM1-203ENST00000520755 PATJQ8NI35 1801 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 H7C4K7 107 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 TEX28O15482 410 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 TYMPP19971 482 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 KLRC2P26717 231 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 JAM2P57087 298 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 POLR2FP61218 127 aaKnown RBP16.38■□□□□ 0.21
LSM1-203ENST00000520755 CREMQ03060 361 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 HYAL1Q12794 435 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 CUL2Q13617 745 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 CTXN3Q4LDR2 81 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 FIGNQ5HY92 759 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 WDR44Q5JSH3 913 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 OVOS1Q6IE37 1185 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 ZNF280DQ6N043 979 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.38■□□□□ 0.21
LSM1-203ENST00000520755 GPR65Q8IYL9 337 aa16.38■□□□□ 0.21
LSM1-203ENST00000520755 PDCL2Q8N4E4 241 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms