RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ARIH2O95376 493 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ESRRBO95718 433 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTLL1O95922 423 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MT-CO1P00395 513 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CD4P01730 458 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CSTBP04080 98 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CD1AP06126 327 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TPM2P07951 284 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DLDP09622 509 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLEC2LP0C7M8 214 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYF5P13349 255 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IDEP14735 1019 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL2RBP14784 551 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GSPT1P15170 499 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATP6V1B1P15313 513 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALOX15P16050 662 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATP2A2P16615 1042 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 XBP1P17861 261 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALOX12P18054 663 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT15P19012 456 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDCP20941 246 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABCB4P21439 1286 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FDXRP22570 491 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TGM1P22735 817 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNFSF4P23510 183 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX6P26196 483 aaKnown RBP eCLIP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 AOAHP28039 575 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PEX2P28328 305 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SDHAP31040 664 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HOXC13P31276 330 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALNSP34059 522 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CTNNA1P35221 906 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT20P35900 424 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL6STP40189 918 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBA7P41226 1012 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 STAT1P42224 750 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PIK3CAP42336 1068 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TECP42680 631 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RAD52P43351 418 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIR2DL3P43628 341 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MMP13P45452 471 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR3P46089 330 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 STT3AP46977 705 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NPTX2P47972 431 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALDH9A1P49189 494 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRIM2P49643 509 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GZMKP49863 264 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DNM2P50570 870 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CASP5P51878 434 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 AGFG1P52594 562 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF131P52739 623 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAPK10P53779 464 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC5A3P53794 718 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC16A1P53985 500 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLE2P56282 527 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCAND1P57086 179 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 VAMP2P63027 116 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TUBA4AP68366 448 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PHC1P78364 1004 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MRPS35P82673 323 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LACTBP83111 547 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLIN5Q00G26 463 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALDH6A1Q02252 535 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TLE2Q04725 743 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PIGFQ07326 219 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DLX2Q07687 328 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF543Q08ER8 600 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 WASHC5Q12768 1159 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXL1Q12952 345 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLF10Q13118 480 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRM1Q13255 1194 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRKG1Q13976 671 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM29Q14134 588 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 EFR3AQ14156 821 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPIDRQ14159 915 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF267Q14586 743 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 STARD3Q14849 445 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIR3DS1Q14943 382 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLD3Q15054 466 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACAP2Q15057 778 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCOLCEQ15113 449 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLCB4Q15147 1175 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LLGL1Q15334 1064 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CNN3Q15417 329 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 STILQ15468 1287 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TWIST1Q15672 202 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLUL1Q15846 466 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NTRK3Q16288 839 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TAF12Q16514 161 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNF151Q2KHN1 245 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANO4Q32M45 955 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PGS1Q32NB8 556 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBC1D25Q3MII6 688 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARL13BQ3SXY8 428 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TUBB8Q3ZCM7 444 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PREPLQ4J6C6 727 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM177Q53S58 311 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RILPL1Q5EBL4 403 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM209BQ5JX69 171 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC158Q5M9N0 1113 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms