RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 UHRF1Q96T88 793 aaPredicted RBP4.78□□□□□ -1.64
NUP54-212ENST00000513248 NDC1Q9BTX1 674 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 PCGF6Q9BYE7 350 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 SPON1Q9HCB6 807 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 SORCS3Q9UPU3 1222 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 REXO2Q9Y3B8 237 aaKnown RBP4.78□□□□□ -1.64
NUP54-212ENST00000513248 DMRT1Q9Y5R6 373 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 NHSL1Q5SYE7 1610 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 ANKARQ7Z5J8 1434 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 ARHGEF10O15013 1369 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 ROCK2O75116 1388 aaKnown RBP4.78□□□□□ -1.64
NUP54-212ENST00000513248 SETD1AO15047 1707 aaKnown RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 IFT172Q9UG01 1749 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 DLC1Q96QB1 1528 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 SLC16A6O15403 523 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 HK3P52790 923 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 PTTG1IPP53801 180 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 ZNF267Q14586 743 aaPredicted RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 FBXO18Q8NFZ0 1043 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 OR10H5Q8NGA6 315 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 CPT1CQ8TCG5 803 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 CCHCR1Q8TD31 782 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 DIS3LQ8TF46 1054 aaKnown RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 SLC25A43Q8WUT9 341 aaPredicted RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 AGAP2Q99490 1192 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 MYOCQ99972 504 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 MRI1Q9BV20 369 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 SENP6Q9GZR1 1112 aaPredicted RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 SLC2A4RGQ9NR83 387 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 TDP1Q9NUW8 608 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 TMEM140Q9NV12 185 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 MOCS1Q9NZB8 636 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 EIF2B4Q9UI10 523 aaKnown RBP4.77□□□□□ -1.65
NUP54-212ENST00000513248 TNS3Q68CZ2 1445 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 KNDC1Q76NI1 1749 aa4.77□□□□□ -1.65
NUP54-212ENST00000513248 EVC2Q86UK5 1308 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 TEX33O43247 280 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 RPS6KA4O75676 772 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 RECQL4O94761 1208 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 SCAF4O95104 1147 aaKnown RBP4.76□□□□□ -1.65
NUP54-212ENST00000513248 SNRPA1P09661 255 aaKnown RBP4.76□□□□□ -1.65
NUP54-212ENST00000513248 SLC6A4P31645 630 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 APOBEC3AP31941 199 aaPredicted RBP4.76□□□□□ -1.65
NUP54-212ENST00000513248 PER3P56645 1201 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 ZNF280AP59817 542 aaPredicted RBP4.76□□□□□ -1.65
NUP54-212ENST00000513248 SNAPC2Q13487 334 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 PGS1Q32NB8 556 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 PPP4R3AQ6IN85 833 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 UNC5CLQ8IV45 518 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 ZNF276Q8N554 614 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 RNF169Q8NCN4 708 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 IL17RDQ8NFM7 739 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 TTC8Q8TAM2 541 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 TFAP2CQ92754 450 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 C1GALT1C1Q96EU7 318 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 CLPTM1LQ96KA5 538 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 FAM193BQ96PV7 902 aaPredicted RBP4.76□□□□□ -1.65
NUP54-212ENST00000513248 NEU1Q99519 415 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 LRFN3Q9BTN0 628 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 NRDE2Q9H7Z3 1164 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 PRDM11Q9NQV5 511 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 GPRC5BQ9NZH0 403 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 CHST2Q9Y4C5 530 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 KIF1AQ12756 1690 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 SBNO1A3KN83 1393 aa4.76□□□□□ -1.65
NUP54-212ENST00000513248 PXDNQ92626 1479 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 ACEP12821 1306 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 FMN2Q9NZ56 1722 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 ADGRB1O14514 1584 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 PRSS29PA6NIE9 313 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 DRGXA6NNA5 263 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 H3BML4 177 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 ALDH2P05091 517 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 SBK3P0C264 359 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 U2AF1L5P0DN76 240 aaPredicted RBP4.75□□□□□ -1.65
NUP54-212ENST00000513248 MALP21145 153 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 PTGS2P35354 604 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 MAP2K6P52564 334 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 NKX6-1P78426 367 aaPredicted RBP4.75□□□□□ -1.65
NUP54-212ENST00000513248 U2AF1Q01081 240 aaKnown RBP eCLIP4.75□□□□□ -1.65
NUP54-212ENST00000513248 UBXN2BQ14CS0 331 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 NBPF8Q3BBV2 869 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 FAM102AQ5T9C2 384 aaPredicted RBP4.75□□□□□ -1.65
NUP54-212ENST00000513248 EFCAB12Q6NXP0 572 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 FAM90A1Q86YD7 464 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 DRC7Q8IY82 874 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 RAB24Q969Q5 203 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 CLIP3Q96DZ5 547 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 TMX3Q96JJ7 454 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 NMRK2Q9NPI5 230 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 FBXO34Q9NWN3 711 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 CHPF2Q9P2E5 772 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 GABBR1Q9UBS5 961 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 TCEAL9Q9UHQ7 104 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 TNFRSF18Q9Y5U5 241 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 TULP4Q9NRJ4 1543 aa4.75□□□□□ -1.65
NUP54-212ENST00000513248 LRRC14BA6NHZ5 514 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 AHRRA9YTQ3 701 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 LEFTY2O00292 366 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 AP1G1O43747 822 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms