RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CBX3Q13185 183 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 CDC37Q16543 378 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 MTERF2Q49AM1 385 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 B3GNT6Q6ZMB0 384 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 UBASH3BQ8TF42 649 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 RNPC3Q96LT9 517 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 NUP85Q9BW27 656 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 LRRC4Q9HBW1 653 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 NPHS2Q9NP85 383 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 HACD3Q9P035 362 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 RAB23Q9ULC3 237 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 AKT3Q9Y243 479 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 SPEF1Q9Y4P9 236 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 RPAP1Q9BWH6 1393 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT87PA6NCN2 255 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 SNTNA6NMZ2 147 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ATP4AP20648 1035 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ABCE1P61221 599 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BNC1Q01954 994 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 POU5F1BQ06416 359 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 STAT4Q14765 748 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 DRAP1Q14919 205 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 C11orf88Q6PI97 169 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BNIPLQ7Z465 357 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 TBC1D10CQ8IV04 446 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC60Q8IWA6 550 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ENKURQ8TC29 256 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BTN2A2Q8WVV5 523 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 DCUN1D5Q9BTE7 237 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 TSSK1BQ9BXA7 367 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 GALNT8Q9NY28 637 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 PCSK1NQ9UHG2 260 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF180Q9UJW8 692 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 KIF20BQ96Q89 1820 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 PAX3P23760 479 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 MKRN4PQ13434 485 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 SLC10A5Q5PT55 438 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 KHDRBS2Q5VWX1 349 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 IZUMO3Q5VZ72 239 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 LAYNQ6UX15 382 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 IZUMO2Q6UXV1 221 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BBS7Q8IWZ6 715 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 MSL3Q8N5Y2 521 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 SCG3Q8WXD2 468 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIM51Q9BSJ1 452 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 BTBD3Q9Y2F9 522 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 STON1Q9Y6Q2 735 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ZBTB39O15060 712 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ANGPT2O15123 496 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 GDF11O95390 407 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 CDH3P22223 829 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 ITGADQ13349 1161 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 RAD9BQ6WBX8 426 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 C16orf62Q7Z3J2 963 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 METTL16Q86W50 562 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 RBBP8NLQ8NC74 664 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 WRNIP1Q96S55 665 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 STRBPQ96SI9 672 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 PDCD10Q9BUL8 212 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 UBA2Q9UBT2 640 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 COMMD3-BMI1R4GMX3 469 aa9.11□□□□□ -0.95
LIMCH1-218ENST00000513024 DENND3A2RUS2 1198 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 FCER1AP12319 257 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ATF4P18848 351 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SOX5P35711 763 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 NNMTP40261 264 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TUFMP49411 452 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 LONRF1Q17RB8 773 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PREPLQ4J6C6 727 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CYB5R4Q7L1T6 521 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RNF180Q86T96 592 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PROM2Q8N271 834 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF713Q8N859 430 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RNASE11Q8TAA1 199 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 NKX2-3Q8TAU0 364 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TMA16Q96EY4 203 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ZIM3Q96PE6 472 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 KATNAL1Q9BW62 490 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TRABDQ9H4I3 376 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 USP31Q70CQ4 1352 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC182A6NF36 153 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM58BPP0C7Q3 252 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF806P0C7X5 589 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 AKAP5P24588 427 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SARSP49591 514 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 BCAP31P51572 246 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 FMR1Q06787 632 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CSTF3Q12996 717 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT72Q14CN4 511 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 C9orf131Q5VYM1 1079 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RNF219Q5W0B1 726 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 MYCBPAPQ8TBZ2 947 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SNX19Q92543 992 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CNDP1Q96KN2 507 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CNPY3Q9BT09 278 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF556Q9HAH1 456 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PLGRKTQ9HBL7 147 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CHMP1AQ9HD42 196 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RBM12Q9NTZ6 932 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 C20orf96Q9NUD7 363 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms