RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 PHBP35232 272 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ADD1P35611 737 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PNPLA4P41247 253 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DGKEP52429 567 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 EPHA7Q15375 998 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 USP39Q53GS9 565 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 HSP90AA4PQ58FG1 418 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SLC24A5Q71RS6 500 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TMC6Q7Z403 805 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 BRSK2Q8IWQ3 736 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ADGRF2Q8IZF7 708 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GPD1LQ8N335 351 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PDCL2Q8N4E4 241 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DNAJC5GQ8N7S2 189 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TSTD1Q8NFU3 115 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GIMAP7Q8NHV1 300 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RUBCNQ92622 972 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GMLQ99445 158 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ZFP14Q9HCL3 533 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PLA2G4CQ9UP65 541 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PCDHB5Q9Y5E4 795 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ITIH6Q6UXX5 1313 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC66A2RUB6 948 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PHF20L1A8MW92 1017 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 POTECB2RU33 542 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 APOEP02649 317 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ERVK-21P61565 698 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DRP2Q13474 957 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 C16orf72Q14CZ0 275 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TAF1BQ53T94 588 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 VGLL2Q8N8G2 317 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GJA10Q969M2 543 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 MCRS1Q96EZ8 462 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SPZ1Q9BXG8 430 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 NUF2Q9BZD4 464 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TXNRD2Q9NNW7 524 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 KCNK9Q9NPC2 374 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RBAKQ9NYW8 714 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GPN3Q9UHW5 284 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 FBXO2Q9UK22 296 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 AGO2Q9UKV8 859 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SIT1Q9Y3P8 196 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RFXAPO00287 272 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CNMDO75829 334 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CAVIN2O95810 425 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 EOMESO95936 686 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 POLR2EP19388 210 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CA4P22748 312 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PSMC2P35998 433 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TAF6P49848 677 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GATMP50440 423 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ASIC2Q16515 512 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LPAL2Q16609 132 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ARSHQ5FYA8 562 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF667Q5HYK9 610 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TMEM63BQ5T3F8 832 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RINT1Q6NUQ1 792 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 POTEGQ6S5H5 508 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 POTEEQ6S8J3 1075 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TRMT11Q7Z4G4 463 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ALYREFQ86V81 257 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 HDAC11Q96DB2 347 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TNIP3Q96KP6 325 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 NUP58Q9BVL2 599 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 EDEM3Q9BZQ6 932 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PDLIM7Q9NR12 457 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TRPM5Q9NZQ8 1165 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LUC7L2Q9Y383 392 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CNTNAP2Q9UHC6 1331 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LOC285556D6RIA3 1793 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 HNRNPCL2B2RXH8 293 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PIK3R2O00459 728 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SLC9A3R1O14745 358 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 HNRNPCL1O60812 293 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TSC22D2O75157 780 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CSDE1O75534 798 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SKAP2O75563 359 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 IFNB1P01574 187 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 MMP1P03956 469 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SLURP2P0DP57 97 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ARP10275 920 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 COL9A1P20849 921 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SAT1P21673 171 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SCRN1Q12765 414 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SNW1Q13573 536 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CDH18Q13634 790 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 OOSP2Q86WS3 158 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DCLK2Q8N568 766 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TBC1D19Q8N5T2 526 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DHTKD1Q96HY7 919 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 KIF2CQ99661 725 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RTP3Q9BQQ7 232 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.12□□□□□ -1.912e-6■■■□□ 17.3
NEDD4-208ENST00000508342 CENPKQ9BS16 269 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PI4K2AQ9BTU6 479 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 NOC4LQ9BVI4 516 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TRMT61BQ9BVS5 477 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 OXCT2Q9BYC2 517 aaPredicted RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms