RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KCNK13Q9HB14 408 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 TMEM8AQ9HCN3 771 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 ZDHHC7Q9NXF8 308 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 COL16A1Q07092 1604 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 ARHGEF35A5YM69 484 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 HLA-DOAP06340 250 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 DLDP09622 509 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 PGM1P36871 562 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 AP2B1P63010 937 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 PICALMQ13492 652 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 THOC5Q13769 683 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 PRKD1Q15139 912 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 LLGL1Q15334 1064 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 RNASEH2BQ5TBB1 312 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 C6orf163Q5TEZ5 329 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 RASIP1Q5U651 963 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 PPP1R2P3Q6NXS1 205 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 B3GNT9Q6UX72 402 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 PCGF5Q86SE9 256 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 MYLK4Q86YV6 388 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 CYP2W1Q8TAV3 490 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 DHX38Q92620 1227 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 GMCL1Q96IK5 515 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 ECSITQ9BQ95 431 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 CBWD1Q9BRT8 395 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 WDR18Q9BV38 432 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 TMEM120AQ9BXJ8 343 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 EPB41L1Q9H4G0 881 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 C17orf75Q9HAS0 396 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 DDX4Q9NQI0 724 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 METTL5Q9NRN9 209 aaKnown RBP10.2□□□□□ -0.78
SYNE1-230ENST00000495090 STK32BQ9NY57 414 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 RABGEF1Q9UJ41 708 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 DCTN4Q9UJW0 460 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 MYH11P35749 1972 aa10.2□□□□□ -0.78
SYNE1-230ENST00000495090 A0A0G2JND7 137 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ZC3H11AO75152 810 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 RPS6KA4O75676 772 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 UFL1O94874 794 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PABPC4LP0CB38 370 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 BMP3P12645 472 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ANPEPP15144 967 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 SERPINB3P29508 390 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PTPN7P35236 360 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ACTR3P61158 418 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GPSM2P81274 684 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 XIAPP98170 497 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GTF2BQ00403 316 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GCNT1Q02742 428 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ZBTB16Q05516 673 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 MCL1Q07820 350 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 FASTKD3Q14CZ7 662 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TBCCQ15814 346 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 DNAL1Q4LDG9 190 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TMCO4Q5TGY1 634 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 DPY19L2Q6NUT2 758 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 AAGABQ6PD74 315 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ACAD11Q709F0 780 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 MARK2Q7KZI7 788 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 LCA5Q86VQ0 697 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ST13P4Q8IZP2 240 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 NME8Q8N427 588 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 MARCH10Q8NA82 808 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ATP11CQ8NB49 1132 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GMCL1P1Q8NEA9 526 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 DTX3LQ8TDB6 740 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TMC2Q8TDI7 906 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TCP10LQ8TDR4 215 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 SEMA4DQ92854 862 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 OXNAD1Q96HP4 312 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 VCPIP1Q96JH7 1222 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 HEMGNQ9BXL5 484 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ACSS3Q9H6R3 686 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PCDH9Q9HC56 1237 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 MRPL47Q9HD33 250 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ACP6Q9NPH0 428 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 NDUFA13Q9P0J0 144 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GGA1Q9UJY5 639 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 SSX2IPQ9Y2D8 614 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ZHX2Q9Y6X8 837 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 MYPNQ86TC9 1320 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 A0A1B0GVG6 124 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 CAPN14A8MX76 684 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 IPO5O00410 1097 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ZBTB39O15060 712 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 GAS7O60861 476 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 FKBP6O75344 327 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 CSDE1O75534 798 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 CIB2O75838 187 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 FAM155BO75949 473 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TM7SF2O76062 418 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 CYP1A1P04798 512 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PIK3CAP42336 1068 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ARSEP51690 589 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 BPIFB4P59827 614 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 NFX1Q12986 1120 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 LIN9Q5TKA1 542 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 IZUMO2Q6UXV1 221 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 KYAT3Q6YP21 454 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 TRIM72Q6ZMU5 477 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms