RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 POU2F2P09086 479 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 ALDH1A3P47895 512 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 CASP4P49662 377 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 AP3M2P53677 418 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 MYL7Q01449 175 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 TWF1Q12792 350 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 ADAM9Q13443 819 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 STIM1Q13586 685 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 PTPN21Q16825 1174 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 TMEM31Q5JXX7 168 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 ZNF658Q5TYW1 1059 aaPredicted RBP14.38□□□□□ -0.11
CCL28-202ENST00000489442 DCP1BQ8IZD4 617 aaKnown RBP14.38□□□□□ -0.11
CCL28-202ENST00000489442 PDCL2Q8N4E4 241 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 TOP6BLQ8N6T0 577 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 OR10T2Q8NGX3 314 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 CXorf38Q8TB03 319 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 PARD3BQ8TEW8 1205 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 TMEM174Q8WUU8 243 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 EDAQ92838 391 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 TMEM209Q96SK2 561 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 CORO1BQ9BR76 489 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 GDAP2Q9NXN4 497 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 DNMT3BQ9UBC3 853 aaKnown RBP14.38□□□□□ -0.11
CCL28-202ENST00000489442 L1RE1Q9UN81 338 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 SLC27A5Q9Y2P5 690 aa14.38□□□□□ -0.11
CCL28-202ENST00000489442 MRPS23Q9Y3D9 190 aaKnown RBP14.38□□□□□ -0.11
CCL28-202ENST00000489442 MTMR11A4FU01 709 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 FAM86C2PA6NEL3 165 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 CST3P01034 146 aaPredicted RBP14.37□□□□□ -0.11
CCL28-202ENST00000489442 ASGR2P07307 311 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 KRT13P13646 458 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 LHX1P48742 406 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 CDR1P51861 262 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 EPHB3P54753 998 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 UBE2HP62256 183 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ZXDAP98168 799 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 SMARCB1Q12824 385 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 PLD1Q13393 1074 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 MTMR3Q13615 1198 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 CYP4A22Q5TCH4 519 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 SCARA3Q6AZY7 606 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ISM2Q6H9L7 571 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 CENPPQ6IPU0 288 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 DPH6Q7L8W6 267 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ELOA2Q8IYF1 753 aaPredicted RBP14.37□□□□□ -0.11
CCL28-202ENST00000489442 ADGRF2Q8IZF7 708 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ATAD1Q8NBU5 361 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ZNF516Q92618 1163 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 MYADMQ96S97 322 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 TSG101Q99816 390 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ZCWPW1Q9H0M4 648 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 DDX43Q9NXZ2 648 aaKnown RBP14.37□□□□□ -0.11
CCL28-202ENST00000489442 SORCS3Q9UPU3 1222 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 ZFP37Q9Y6Q3 630 aaPredicted RBP14.37□□□□□ -0.11
CCL28-202ENST00000489442 NOTCH4Q99466 2003 aa14.37□□□□□ -0.11
CCL28-202ENST00000489442 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 ZNF197O14709 1029 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 N4BP1O75113 896 aaKnown RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 RHOP08100 348 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 LAMP2P13473 410 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 PCSK1P29120 753 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 PSMC2P35998 433 aaKnown RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 PRCPP42785 496 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 TUFMP49411 452 aaKnown RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 TNNC1P63316 161 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 NFIL3Q16649 462 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 WDR72Q3MJ13 1102 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 MGAT5BQ3V5L5 792 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 INTS8Q75QN2 995 aaKnown RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 PDZD4Q76G19 769 aaPredicted RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 FAM186BQ8IYM0 893 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 SPATA20Q8TB22 786 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 FAM200AQ8TCP9 573 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 TMC2Q8TDI7 906 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 C2orf15Q8WU43 125 aaKnown RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 SYAP1Q96A49 352 aaPredicted RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 SEPT5Q99719 369 aaPredicted RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 RTP3Q9BQQ7 232 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 ACBD6Q9BR61 282 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 KCNK12Q9HB15 430 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 ABI2Q9NYB9 513 aaPredicted RBP14.36□□□□□ -0.11
CCL28-202ENST00000489442 IGSF9Q9P2J2 1179 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 EPS15L1Q9UBC2 864 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 CDH7Q9ULB5 785 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 YIPF1Q9Y548 306 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 TECTAO75443 2155 aa14.36□□□□□ -0.11
CCL28-202ENST00000489442 CETN3O15182 167 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 MAPK13O15264 365 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 GPR37L1O60883 481 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 ACAT1P24752 427 aaKnown RBP14.35□□□□□ -0.11
CCL28-202ENST00000489442 ATICP31939 592 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 VAMP7P51809 220 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 MYL6P60660 151 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 DLG4P78352 724 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 TAF12Q16514 161 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 NFE2Q16621 373 aaPredicted RBP14.35□□□□□ -0.11
CCL28-202ENST00000489442 SOWAHAQ2M3V2 549 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 EDRF1Q3B7T1 1238 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 UBALD2Q8IYN6 164 aa14.35□□□□□ -0.11
CCL28-202ENST00000489442 ITFG1Q8TB96 612 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms