RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CST3P01034 146 aaPredicted RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 EPB41P11171 864 aaKnown RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 CCNE1P24864 410 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 CDR1P51861 262 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 MYL6P60660 151 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 ADCY1Q08828 1119 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 TPGS2Q68CL5 300 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 RNF19BQ6ZMZ0 732 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 C15orf39Q6ZRI6 1047 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 CCDC149Q6ZUS6 474 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 INTS8Q75QN2 995 aaKnown RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 THEM5Q8N1Q8 247 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 PDCL2Q8N4E4 241 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 OR10T2Q8NGX3 314 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 TMC2Q8TDI7 906 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 NELFBQ8WX92 580 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 ZNF707Q96C28 371 aaPredicted RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 DHTKD1Q96HY7 919 aaPredicted RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 OXCT2Q9BYC2 517 aaPredicted RBP15.86■□□□□ 0.13
USP4-212ENST00000486549 NUP62CLQ9H1M0 184 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 LOC730098B7Z3J9 87 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 PPP1R3GB7ZBB8 358 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 SEC24AO95486 1093 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 ATF2P15336 505 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 PPP1R2P41236 205 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 AP3M2P53677 418 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 CLDN10P78369 228 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 LRRC63Q05C16 580 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 RNF135Q8IUD6 432 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 ADGRF2Q8IZF7 708 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 MMS19Q96T76 1030 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 RTP3Q9BQQ7 232 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 PRKD2Q9BZL6 878 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 GDAP2Q9NXN4 497 aa15.85■□□□□ 0.13
USP4-212ENST00000486549 AFF4Q9UHB7 1163 aaKnown RBP15.85■□□□□ 0.13
USP4-212ENST00000486549 DOCK6Q96HP0 2047 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 LRG1P02750 347 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 C4BPAP04003 597 aaKnown RBP15.84■□□□□ 0.13
USP4-212ENST00000486549 HNRNPA1P09651 372 aaKnown RBP eCLIP15.84■□□□□ 0.13
USP4-212ENST00000486549 ACAT1P24752 427 aaKnown RBP15.84■□□□□ 0.13
USP4-212ENST00000486549 GCLMP48507 274 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 STX17P56962 302 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 TNNC1P63316 161 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 FKBP3Q00688 224 aaKnown RBP15.84■□□□□ 0.13
USP4-212ENST00000486549 NCOA4Q13772 614 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 SOWAHAQ2M3V2 549 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 WDR72Q3MJ13 1102 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 SLC39A12Q504Y0 691 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 C1orf220Q5T0J3 134 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 OSTM1Q86WC4 334 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 TMEM86AQ8N2M4 240 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 TOP6BLQ8N6T0 577 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 TRIML1Q8N9V2 468 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 KHSRPQ92945 711 aaKnown RBP eCLIP15.84■□□□□ 0.13
USP4-212ENST00000486549 ELMO3Q96BJ8 720 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 MKNK1Q9BUB5 465 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 DDX43Q9NXZ2 648 aaKnown RBP15.84■□□□□ 0.13
USP4-212ENST00000486549 NXF1Q9UBU9 619 aaKnown RBP15.84■□□□□ 0.13
USP4-212ENST00000486549 INSL5Q9Y5Q6 135 aa15.84■□□□□ 0.13
USP4-212ENST00000486549 MTMR11A4FU01 709 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 SLC16A3O15427 465 aaKnown RBP15.83■□□□□ 0.12
USP4-212ENST00000486549 HCRTO43612 131 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 XYLBO75191 536 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 VNN1O95497 513 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 PIK3CAP42336 1068 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 NTHL1P78549 312 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 MYL7Q01449 175 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 TSPY1Q01534 308 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 PAK1Q13153 545 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 GPR17Q13304 367 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 UVSSAQ2YD98 709 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 ZNF699Q32M78 642 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 DCAF17Q5H9S7 520 aaPredicted RBP15.83■□□□□ 0.12
USP4-212ENST00000486549 TCERG1LQ5VWI1 586 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 SV2AQ7L0J3 742 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 GRASPQ7Z6J2 395 aaPredicted RBP15.83■□□□□ 0.12
USP4-212ENST00000486549 TCEAL8Q8IYN2 117 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 GPT2Q8TD30 523 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 SYAP1Q96A49 352 aaPredicted RBP15.83■□□□□ 0.12
USP4-212ENST00000486549 ZCWPW1Q9H0M4 648 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.83■□□□□ 0.122e-15■■■■■ 372.6
USP4-212ENST00000486549 CLUHO75153 1309 aa15.83■□□□□ 0.12
USP4-212ENST00000486549 BICDL2A1A5D9 508 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 C2CD4DB7Z1M9 353 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 IKBKBO14920 756 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 VNN2O95498 520 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 HLA-DRAP01903 254 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 HOXA9P31269 272 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 ATICP31939 592 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 PPP3CAQ08209 521 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 TWF1Q12792 350 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 DUSP4Q13115 394 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 ZACNQ401N2 412 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 TTI2Q6NXR4 508 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 CYP26C1Q6V0L0 522 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 SCARA5Q6ZMJ2 495 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 GET4Q7L5D6 327 aaPredicted RBP15.82■□□□□ 0.12
USP4-212ENST00000486549 ZC3H3Q8IXZ2 948 aaKnown RBP15.82■□□□□ 0.12
USP4-212ENST00000486549 ATAD1Q8NBU5 361 aa15.82■□□□□ 0.12
USP4-212ENST00000486549 KBTBD7Q8WVZ9 684 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms