RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 CEP135Q66GS9 1140 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 INTS8Q75QN2 995 aaKnown RBP19.35■□□□□ 0.69
HDAC6-225ENST00000483506 OTOP3Q7RTS5 596 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 THEM5Q8N1Q8 247 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 TDRD5Q8NAT2 981 aaKnown RBP19.35■□□□□ 0.69
HDAC6-225ENST00000483506 MKNK1Q9BUB5 465 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 VRTNQ9H8Y1 702 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 PIDD1Q9HB75 910 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 CYP4F11Q9HBI6 524 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 AVENQ9NQS1 362 aaPredicted RBP19.35■□□□□ 0.69
HDAC6-225ENST00000483506 R3HCC1Q9Y3T6 440 aaKnown RBP19.35■□□□□ 0.69
HDAC6-225ENST00000483506 SNX9Q9Y5X1 595 aa19.35■□□□□ 0.69
HDAC6-225ENST00000483506 MTMR11A4FU01 709 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 PRRG1O14668 218 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 GABRDO14764 452 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 CCL16O15467 120 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 CST3P01034 146 aaPredicted RBP19.34■□□□□ 0.69
HDAC6-225ENST00000483506 C4BPAP04003 597 aaKnown RBP19.34■□□□□ 0.69
HDAC6-225ENST00000483506 BMP6P22004 513 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 ATICP31939 592 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 PSMC2P35998 433 aaKnown RBP19.34■□□□□ 0.69
HDAC6-225ENST00000483506 DLG4P78352 724 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 LRRC63Q05C16 580 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 SMARCB1Q12824 385 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 ADAM9Q13443 819 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 SOWAHAQ2M3V2 549 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 TDRD10Q5VZ19 366 aaKnown RBP19.34■□□□□ 0.69
HDAC6-225ENST00000483506 FOXR2Q6PJQ5 311 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 PLCD3Q8N3E9 789 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 TMEM209Q96SK2 561 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 XYLT2Q9H1B5 865 aa19.34■□□□□ 0.69
HDAC6-225ENST00000483506 TRIOO75962 3097 aa19.33■□□□□ 0.69
HDAC6-225ENST00000483506 DCXO43602 365 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 N4BP1O75113 896 aaKnown RBP19.33■□□□□ 0.68
HDAC6-225ENST00000483506 FAM163BP0C2L3 166 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 ZACNQ401N2 412 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 FAM186BQ8IYM0 893 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 C2orf15Q8WU43 125 aaKnown RBP19.33■□□□□ 0.68
HDAC6-225ENST00000483506 ACSF2Q96CM8 615 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-225ENST00000483506 DHTKD1Q96HY7 919 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-225ENST00000483506 ACBD6Q9BR61 282 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 CRISPLD1Q9H336 500 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 TSHZ2Q9NRE2 1034 aa19.33■□□□□ 0.68
HDAC6-225ENST00000483506 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.33■□□□□ 0.68
HDAC6-225ENST00000483506 LRG1P02750 347 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 ALADP13716 330 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 SP100P23497 879 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-225ENST00000483506 CCNE1P24864 410 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 LHX1P48742 406 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 VAMP7P51809 220 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 PMS1P54277 932 aaKnown RBP19.32■□□□□ 0.68
HDAC6-225ENST00000483506 STIM1Q13586 685 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 GRASPQ7Z6J2 395 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-225ENST00000483506 LRRTM3Q86VH5 581 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 OSTM1Q86WC4 334 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 ADGRF2Q8IZF7 708 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 TRIML1Q8N9V2 468 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 KBTBD7Q8WVZ9 684 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 SYAP1Q96A49 352 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-225ENST00000483506 PKMYT1Q99640 499 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 TSG101Q99816 390 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 EPS15L1Q9UBC2 864 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 DNMT3BQ9UBC3 853 aaKnown RBP19.32■□□□□ 0.68
HDAC6-225ENST00000483506 MUTYHQ9UIF7 546 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 YIPF1Q9Y548 306 aa19.32■□□□□ 0.68
HDAC6-225ENST00000483506 PSMA7O14818 248 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 CETN3O15182 167 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 SLC16A3O15427 465 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 TACC1O75410 805 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 VNN1O95497 513 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 CD44P16070 742 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 WARSP23381 471 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 MYL6P60660 151 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 FKBP3Q00688 224 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 MYL7Q01449 175 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 PLD1Q13393 1074 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 TRPC3Q13507 836 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 SLC39A12Q504Y0 691 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 ANKRD40Q6AI12 368 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 SV2AQ7L0J3 742 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 DCP1BQ8IZD4 617 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 ATAD1Q8NBU5 361 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 PGLYRP2Q96PD5 576 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 DDX43Q9NXZ2 648 aaKnown RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 KIAA1468Q9P260 1216 aa19.31■□□□□ 0.68
HDAC6-225ENST00000483506 ZFP37Q9Y6Q3 630 aaPredicted RBP19.31■□□□□ 0.68
HDAC6-225ENST00000483506 PPP1R3GB7ZBB8 358 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 PHACTR2O75167 634 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 KRT13P13646 458 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 FSHRP23945 695 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 PCSK1P29120 753 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 EPHA5P54756 1037 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 TSPY1Q01534 308 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 TWF1Q12792 350 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 DUSP4Q13115 394 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 BIRC3Q13489 604 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 NCOA4Q13772 614 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 PTPN21Q16825 1174 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 WDR72Q3MJ13 1102 aa19.3■□□□□ 0.68
HDAC6-225ENST00000483506 PABPC1LQ4VXU2 614 aaKnown RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms