RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CHP1Q99653 195 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 ARID3AQ99856 593 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 AGPAT1Q99943 283 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SYT11Q9BT88 431 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 TSGA10Q9BZW7 698 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SNX25Q9H3E2 840 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 NRDE2Q9H7Z3 1164 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 RC3H2Q9HBD1 1191 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 GOLGA2P5Q9HBQ8 144 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 NOCTQ9UK39 431 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 PCDHB8Q9UN66 801 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 PCDHGC3Q9UN70 934 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 FAN1Q9Y2M0 1017 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 INSL6Q9Y581 213 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 CEP83Q9Y592 693 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SF3B1O75533 1304 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP39-215ENST00000481409 SOWAHDA6NJG2 315 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 CCDC85CA6NKD9 419 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 PPEF2O14830 753 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 TADA2AO75478 443 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 GJB5O95377 273 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 WEE2P0C1S8 567 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 PPM1AP35813 382 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 GNL1P36915 607 aaPredicted RBP10.83□□□□□ -0.68
USP39-215ENST00000481409 OR1G1P47890 313 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 SNX16P57768 344 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 ARID5AQ03989 594 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 MAPRE1Q15691 268 aaKnown RBP10.83□□□□□ -0.68
USP39-215ENST00000481409 E4F1Q66K89 784 aaPredicted RBP10.83□□□□□ -0.68
USP39-215ENST00000481409 C16orf59Q7L2K0 433 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 ZNF571Q7Z3V5 609 aaPredicted RBP10.83□□□□□ -0.68
USP39-215ENST00000481409 ZNF280BQ86YH2 543 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 ADGRF2Q8IZF7 708 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 THEM5Q8N1Q8 247 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 OR6B3Q8NGW1 331 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 SLC30A5Q8TAD4 765 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 UBE2Q2Q8WVN8 375 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 DDX1Q92499 740 aaKnown RBP10.83□□□□□ -0.68
USP39-215ENST00000481409 TRIM11Q96F44 468 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 FAM84AQ96KN4 292 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 ACBD6Q9BR61 282 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 MIS12Q9H081 205 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 LHX5Q9H2C1 402 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 SMYD3Q9H7B4 428 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 ADAM28Q9UKQ2 775 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 POLIQ9UNA4 740 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 STXBP5LQ9Y2K9 1186 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 RWDD3Q9Y3V2 267 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 SLC4A7Q9Y6M7 1214 aa10.83□□□□□ -0.68
USP39-215ENST00000481409 A8MXQ7 604 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 NRP1O14786 923 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 SPTLC1O15269 473 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 GALTP07902 379 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ACRP10323 421 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 CD58P19256 250 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 NDST1P52848 882 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 RAD23BP54727 409 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 SMARCB1Q12824 385 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 CNGA2Q16280 664 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 TIGD5Q53EQ6 642 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 SGO2Q562F6 1265 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 RASIP1Q5U651 963 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ARHGAP17Q68EM7 881 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ALKBH5Q6P6C2 394 aaKnown RBP10.82□□□□□ -0.68
USP39-215ENST00000481409 RAD9BQ6WBX8 426 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 SCARA5Q6ZMJ2 495 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.82□□□□□ -0.68
USP39-215ENST00000481409 OTOP2Q7RTS6 562 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 SLC47A2Q86VL8 602 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 TNS4Q8IZW8 715 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 PDCL2Q8N4E4 241 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 MSANTD4Q8NCY6 345 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 WHAMMQ8TF30 809 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 KBTBD7Q8WVZ9 684 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ZNF606Q8WXB4 792 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 VCPIP1Q96JH7 1222 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ZNF830Q96NB3 372 aaPredicted RBP10.82□□□□□ -0.68
USP39-215ENST00000481409 ZNF558Q96NG5 402 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 YME1L1Q96TA2 773 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 RAD9AQ99638 391 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.82□□□□□ -0.68
USP39-215ENST00000481409 SDCBP2Q9H190 292 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 CWH43Q9H720 699 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ADAMTS1Q9UHI8 967 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 NAGPAQ9UK23 515 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 CDH9Q9ULB4 789 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 L1RE1Q9UN81 338 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ADGRG1Q9Y653 693 aa10.82□□□□□ -0.68
USP39-215ENST00000481409 ZBBXA8MT70 800 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 BTNL10A8MVZ5 291 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 H7C4K7 107 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 THAP12O43422 761 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 KRT86O43790 486 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 RTN2O75298 545 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 UPP2O95045 317 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 OAZ2O95190 189 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 SETSIPP0DME0 302 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 MYBL1P10243 752 aa10.81□□□□□ -0.68
USP39-215ENST00000481409 IBSPP21815 317 aaPredicted RBP10.81□□□□□ -0.68
USP39-215ENST00000481409 CDH5P33151 784 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms