RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 GAREM2Q75VX8 874 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 CAMKK1Q8N5S9 505 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 KCTD17Q8N5Z5 321 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 IGSF22Q8N9C0 903 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 TTC8Q8TAM2 541 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 ZFYVE19Q96K21 471 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 ZBTB45Q96K62 511 aaPredicted RBP13.69□□□□□ -0.22
SKA3-206ENST00000475251 TMEM209Q96SK2 561 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 MKNK1Q9BUB5 465 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 SLC27A5Q9Y2P5 690 aa13.69□□□□□ -0.22
SKA3-206ENST00000475251 TIMM13Q9Y5L4 95 aaPredicted RBP13.69□□□□□ -0.22
SKA3-206ENST00000475251 MAP1BP46821 2468 aaKnown RBP13.69□□□□□ -0.22
SKA3-206ENST00000475251 TTC26A0AVF1 554 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 TM4SF5O14894 197 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 MEFVO15553 781 aaPredicted RBP13.68□□□□□ -0.22
SKA3-206ENST00000475251 VNN2O95498 520 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 PLS3P13797 630 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 MAPK7Q13164 816 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 WDR44Q5JSH3 913 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 C1orf186Q6ZWK4 172 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 BICD1Q96G01 975 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 ZC3H10Q96K80 434 aaKnown RBP13.68□□□□□ -0.22
SKA3-206ENST00000475251 RUSC1Q9BVN2 902 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 CRISPLD1Q9H336 500 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 VPS45Q9NRW7 570 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 KCND2Q9NZV8 630 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 ZFHX4Q86UP3 3567 aa13.68□□□□□ -0.22
SKA3-206ENST00000475251 EXTL3O43909 919 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 MAPTP10636 758 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 SCP2P22307 547 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 AVPR1AP37288 418 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 MPLP40238 635 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 NEK4P51957 841 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 SMARCB1Q12824 385 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 KARSQ15046 597 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 ZBTB6Q15916 424 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 MGAT5BQ3V5L5 792 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 SEZ6Q53EL9 994 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 PLA2G2CQ5R387 149 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 KBTBD6Q86V97 674 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 GPIHBP1Q8IV16 184 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 CD302Q8IX05 232 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 C4orf32Q8N8J7 132 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 ATAD1Q8NBU5 361 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 TMEM161BQ8NDZ6 487 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 C2orf15Q8WU43 125 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 LRRC3BQ96PB8 259 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 SEPT5Q99719 369 aaPredicted RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 LLPHQ9BRT6 129 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 LSM14BQ9BX40 385 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 KIF9Q9HAQ2 790 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 C2orf42Q9NWW7 574 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 LARSQ9P2J5 1176 aaKnown RBP13.67□□□□□ -0.22
SKA3-206ENST00000475251 DSEQ9UL01 958 aa13.67□□□□□ -0.22
SKA3-206ENST00000475251 TRDMT1O14717 391 aaKnown RBP13.66□□□□□ -0.22
SKA3-206ENST00000475251 KCNK5O95279 499 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 PRAMEF12O95522 483 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 DDX6P26196 483 aaKnown RBP eCLIP13.66□□□□□ -0.22
SKA3-206ENST00000475251 PRPHP41219 470 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 HMGN5P82970 282 aaKnown RBP13.66□□□□□ -0.22
SKA3-206ENST00000475251 SPAG1Q07617 926 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 TNK2Q07912 1038 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 BFSP1Q12934 665 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 RUNX3Q13761 415 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 ELF2Q15723 593 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 CCDC6Q16204 474 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 FBXO43Q4G163 708 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 TMEM196Q5HYL7 178 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 RNF43Q68DV7 783 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 CC2D1AQ6P1N0 951 aaPredicted RBP13.66□□□□□ -0.22
SKA3-206ENST00000475251 DTHD1Q6ZMT9 781 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 METTL23Q86XA0 190 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 FBXO18Q8NFZ0 1043 aa13.66□□□□□ -0.22
SKA3-206ENST00000475251 RPF1Q9H9Y2 349 aaKnown RBP13.66□□□□□ -0.22
SKA3-206ENST00000475251 SOBPA7XYQ1 873 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 SFI1A8K8P3 1242 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 RHOBTB1O94844 696 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 PROS1P07225 676 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 DRD1P21728 446 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 PXNP49023 591 aaPredicted RBP13.65□□□□□ -0.22
SKA3-206ENST00000475251 LIG4P49917 911 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 VASPP50552 380 aaPredicted RBP13.65□□□□□ -0.22
SKA3-206ENST00000475251 LILRA4P59901 499 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 CYP4F8P98187 520 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 SLC39A12Q504Y0 691 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 SPATA1Q5VX52 437 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 CMTM8Q8IZV2 173 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 THEM5Q8N1Q8 247 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 FAM184AQ8NB25 1140 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 CCDC26Q8TAB7 109 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 SPPL2BQ8TCT7 592 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 SENP8Q96LD8 212 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 FAM83CQ9BQN1 747 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 GKN1Q9NS71 199 aa13.65□□□□□ -0.22
SKA3-206ENST00000475251 LACTBL1A8MY62 500 aa13.64□□□□□ -0.23
SKA3-206ENST00000475251 HNRNPDLO14979 420 aaKnown RBP13.64□□□□□ -0.23
SKA3-206ENST00000475251 OGTO15294 1046 aa13.64□□□□□ -0.23
SKA3-206ENST00000475251 SOAT2O75908 522 aa13.64□□□□□ -0.23
SKA3-206ENST00000475251 CYP11A1P05108 521 aa13.64□□□□□ -0.23
SKA3-206ENST00000475251 ABCD1P33897 745 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms