RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TMEM161AQ9NX61 479 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 PUF60Q9UHX1 559 aaKnown RBP13.66□□□□□ -0.22
VPS13D-205ENST00000473099 GTF3C4Q9UKN8 822 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 JRKLQ9Y4A0 524 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 PCDHGC5Q9Y5F6 944 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 PTPRDP23468 1912 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 TMCO5BA8MYB1 307 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 HOXA2O43364 376 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 NBNO60934 754 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 ABL1P00519 1130 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 CXCL10P02778 98 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 CDH5P33151 784 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-205ENST00000473099 NOP2P46087 812 aaKnown RBP13.65□□□□□ -0.22
VPS13D-205ENST00000473099 RAP1GAPP47736 663 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SCNN1GP51170 649 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 ATN1P54259 1190 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-205ENST00000473099 TERF1P54274 439 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 LILRA4P59901 499 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 NOMO3P69849 1222 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 TLE2Q04725 743 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SOX4Q06945 474 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-205ENST00000473099 FAAP100Q0VG06 881 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SGO2Q562F6 1265 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 LIN9Q5TKA1 542 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SCARA3Q6AZY7 606 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SLC4A11Q8NBS3 891 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 RNF169Q8NCN4 708 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 TMEM35BQ8NCS4 154 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 LPPQ93052 612 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 SDCBP2Q9H190 292 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 LHX5Q9H2C1 402 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 ACP6Q9NPH0 428 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 AVENQ9NQS1 362 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-205ENST00000473099 UVRAGQ9P2Y5 699 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 TFR2Q9UP52 801 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 DUSP10Q9Y6W6 482 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 DNAH12Q6ZR08 3092 aa13.65□□□□□ -0.22
VPS13D-205ENST00000473099 ALPK3Q96L96 1907 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 MEIS3P2A8K0S8 358 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 PPEF2O14830 753 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 MTA2O94776 668 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 MOCS3O95396 460 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 CD19P15391 556 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 ABCB4P21439 1286 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 NDST1P52848 882 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 CDH8P55286 799 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 C1QBPQ07021 282 aaKnown RBP13.64□□□□□ -0.23
VPS13D-205ENST00000473099 TUSC3Q13454 348 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 TRIM60Q495X7 471 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 LIMS2Q7Z4I7 341 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 NECAB2Q7Z6G3 386 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 PALB2Q86YC2 1186 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 PHF13Q86YI8 300 aaPredicted RBP13.64□□□□□ -0.23
VPS13D-205ENST00000473099 TMEM86AQ8N2M4 240 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 DBF4BQ8NFT6 615 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 WHAMMQ8TF30 809 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 MIS12Q9H081 205 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 L2HGDHQ9H9P8 463 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 TAS2R14Q9NYV8 317 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 LCMT1Q9UIC8 334 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 TBX21Q9UL17 535 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 CAPN6Q9Y6Q1 641 aa13.64□□□□□ -0.23
VPS13D-205ENST00000473099 PODXLO00592 558 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 BUB1O43683 1085 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 URI1O94763 535 aaPredicted RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 CYP1A2P05177 515 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 CALB1P05937 261 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 CLTBP09497 229 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 PRLRP16471 622 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 WARSP23381 471 aaKnown RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 BRD2P25440 801 aaKnown RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 CNGA2Q16280 664 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 SOWAHAQ2M3V2 549 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 ZNF394Q53GI3 561 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 NOMO2Q5JPE7 1267 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 PRPF38BQ5VTL8 546 aaKnown RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 NAA35Q5VZE5 725 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 RTN4RL1Q86UN2 441 aaPredicted RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 MCOLN2Q8IZK6 566 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 TPCN2Q8NHX9 752 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 SLC35G2Q8TBE7 412 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 LINC01599Q8WXQ3 324 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 ZNF653Q96CK0 615 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 CYFIP2Q96F07 1278 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 TNIP3Q96KP6 325 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 THAP2Q9H0W7 228 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 SNX25Q9H3E2 840 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 GOLGA2P5Q9HBQ8 144 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 MRPL47Q9HD33 250 aaKnown RBP13.63□□□□□ -0.23
VPS13D-205ENST00000473099 TMEM39AQ9NV64 488 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 MIOSQ9NXC5 875 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 STRIP2Q9ULQ0 834 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 ATP11BQ9Y2G3 1177 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 PCDHB7Q9Y5E2 793 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 SCINQ9Y6U3 715 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 BRCA2P51587 3418 aa13.63□□□□□ -0.23
VPS13D-205ENST00000473099 VWA8A3KMH1 1905 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 CYB561D2O14569 222 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 ENPP3O14638 875 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 KIF4AO95239 1232 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms