RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MTMR1Q13613 665 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 PKN3Q6P5Z2 889 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF184Q99676 751 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 MLPHQ9BV36 600 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 A0A087WXM4 84 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 SEC24DO94855 1032 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 RMND5AQ9H871 391 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CAAP1Q9H8G2 361 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 WARSP23381 471 aaKnown RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 STAT5AP42229 794 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 STAT5BP51692 787 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 NCALDP61601 193 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 DGUOKQ16854 277 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 PPP1R14BQ96C90 147 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 ERGIC2Q96RQ1 377 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 SPATA16Q9BXB7 569 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 GTF2IP78347 998 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 MAPK7Q13164 816 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC149Q6ZUS6 474 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 GPD1LQ8N335 351 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 PACSIN1Q9BY11 444 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 KLHL20Q9Y2M5 609 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 QARSP47897 775 aaKnown RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 FAM102AQ5T9C2 384 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ARHGAP17Q68EM7 881 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC60Q8IWA6 550 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 DCUN1D1Q96GG9 259 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 DEPDC7Q96QD5 511 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 PALB2Q86YC2 1186 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 SLC22A9Q8IVM8 553 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ACTRT1Q8TDG2 376 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 C17orf80Q9BSJ5 609 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 PHACTR1Q9C0D0 580 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CASS4Q9NQ75 786 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ARHGEF38Q9NXL2 777 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 STOML2Q9UJZ1 356 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 RARGP13631 454 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 MAGEA10P43363 369 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 SLC35G2Q8TBE7 412 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ENKURQ8TC29 256 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 MAP3K14Q99558 947 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 VTI1BQ9UEU0 232 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 PDZK1Q5T2W1 519 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CYP4Z1Q86W10 505 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 AADATQ8N5Z0 425 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 MLXIPLQ9NP71 852 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CD3EAPO15446 510 aaKnown RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 CNOT7Q9UIV1 285 aaKnown RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 STON1Q9Y6Q2 735 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 VPS4BO75351 444 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 RHOBTB3O94955 611 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 C12orf60Q5U649 245 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 BNC2Q6ZN30 1099 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ARL8AQ96BM9 186 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 FEM1BQ9UK73 627 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 GDAQ9Y2T3 454 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 ERVK-7P63135 1459 aa13.86□□□□□ -0.19
COL6A3-209ENST00000472056 A0A0A6YYK5 440 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-209ENST00000472056 CYTH3O43739 400 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 GLRA3O75311 464 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 MYL4P12829 197 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 EIF2B2P49770 351 aaKnown RBP13.85□□□□□ -0.19
COL6A3-209ENST00000472056 RAB25P57735 213 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 PADI6Q6TGC4 694 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 B3GNT6Q6ZMB0 384 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 LPCAT2Q7L5N7 544 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 UBE2OQ9C0C9 1292 aaKnown RBP13.85□□□□□ -0.19
COL6A3-209ENST00000472056 FBXO28Q9NVF7 368 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 LRFN2Q9ULH4 789 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 FBLN1P23142 703 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 MAGEA4P43358 317 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF235Q14590 738 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 BARGINQ6ZT62 677 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ERO1BQ86YB8 467 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ATXN2LQ8WWM7 1075 aaKnown RBP13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ANKS1AQ92625 1134 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 TPRKBQ9Y3C4 175 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 MAGI2Q86UL8 1455 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 C15orf38-AP3S2A0A0A6YYH1 394 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ESYT3A0FGR9 886 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 TBX3O15119 743 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 AHCYL1O43865 530 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 FSBPO95073 299 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 IL18RAPO95256 599 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 HK2P52789 917 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 GSTA3Q16772 222 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ARPINQ7Z6K5 226 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ZBTB10Q96DT7 871 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 TAGLN3Q9UI15 199 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ZFYVE16Q7Z3T8 1539 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 PHF20L1A8MW92 1017 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 IRGCQ6NXR0 463 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF786Q8N393 782 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 SPATA18Q8TC71 538 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 PCIF1Q9H4Z3 704 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 PCDHB2Q9Y5E7 798 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 PEX3P56589 373 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 TOB2Q14106 344 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-209ENST00000472056 LRRC14Q15048 493 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC33Q8N5R6 958 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms