RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 KRT38O76015 456 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PMS1P54277 932 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ERVK-24P63145 666 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 GPC5P78333 572 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PTK2Q05397 1052 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 RCN1Q15293 331 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MTERF2Q49AM1 385 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 CCDC137Q6PK04 289 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 HAUS6Q7Z4H7 955 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 STK32AQ8WU08 396 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PPP2R3CQ969Q6 453 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PPP1R14BQ96C90 147 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MTBPQ96DY7 904 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TEPSINQ96N21 525 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 OSBPL8Q9BZF1 889 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 SUCLA2Q9P2R7 463 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ATXN10Q9UBB4 475 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ARHGAP26Q9UNA1 814 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MYH4Q9Y623 1939 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 EML1O00423 815 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ATP9AO75110 1047 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 LDHAP00338 332 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 APOA1P02647 267 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 SPATA31C1P0DKV0 1188 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MYBP10242 640 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PTPN4P29074 926 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 NMT1P30419 496 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 GSTA3Q16772 222 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 VSIG10LQ86VR7 867 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 CCDC117Q8IWD4 279 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 INPP5DQ92835 1189 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 RBM41Q96IZ5 413 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 NT5C1BQ96P26 610 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TRABDQ9H4I3 376 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MROH8Q9H579 483 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 MRGBPQ9NV56 204 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 BTBD7Q9P203 1132 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TMCO1Q9UM00 188 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 C2CD2Q9Y426 696 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PPME1Q9Y570 386 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 SNX5Q9Y5X3 404 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 IGLV3-22A0A075B6J6 115 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 WDR91A4D1P6 747 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 LRRIQ4A6NIV6 560 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TLR3O15455 904 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 KLHL2O95198 593 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 LYPLA2O95372 231 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 EIF2S1P05198 315 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 KRT8P05787 483 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 NCF2P19878 526 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 CALB2P22676 271 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ARL1P40616 181 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 NUP107P57740 925 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PSMC6P62333 389 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 VGLL4Q14135 290 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TTLL4Q14679 1199 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 SLC30A10Q6XR72 485 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ABI1Q8IZP0 508 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 C1orf131Q8NDD1 294 aaKnown RBP6.51□□□□□ -1.37
VPS13D-202ENST00000460333 DTX3LQ8TDB6 740 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TTC17Q96AE7 1141 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ERP44Q9BS26 406 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 HSD3B7Q9H2F3 369 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TRIM10Q9UDY6 481 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 DCTN4Q9UJW0 460 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 UBOX5O94941 541 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TJP3O95049 919 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 RFC5P40937 340 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 RGS2P41220 211 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 PPIL2Q13356 520 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 RABGAP1LQ5R372 815 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 ATP11CQ8NB49 1132 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 TTC13Q8NBP0 860 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 OR2W6PQ8NHA6 318 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 GDF3Q9NR23 364 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 INTS13Q9NVM9 706 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 AP4S1Q9Y587 144 aa6.51□□□□□ -1.37
VPS13D-202ENST00000460333 NFASCO94856 1347 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 P4HA2O15460 535 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 DAB1O75553 588 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TGFB3P10600 412 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TAL1P17542 331 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 PBX1P40424 430 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SURF1Q15526 300 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 LACTB2Q53H82 288 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF662Q6ZS27 426 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 C1orf186Q6ZWK4 172 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF720Q7Z2F6 126 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MYLK4Q86YV6 388 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RIOX2Q8IUF8 465 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CLEC4DQ8WXI8 215 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SEPT1Q8WYJ6 367 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 JADE3Q92613 823 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TATDN2Q93075 761 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MS4A14Q96JA4 679 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SMYD3Q9H7B4 428 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF212Q9UDV6 495 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MAD1L1Q9Y6D9 718 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CAPN9O14815 690 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SLC16A4O15374 487 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms