RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 STRA6Q9BX79 667 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 LINGO3P0C6S8 592 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 BLMHQ13867 455 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 SLC5A9Q2M3M2 681 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 TBC1D25Q3MII6 688 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 EMC10Q5UCC4 262 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 TTC27Q6P3X3 843 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 GDAP1Q8TB36 358 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 ZNF606Q8WXB4 792 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 PRCCQ92733 491 aaPredicted RBP16.28■□□□□ 0.2
LMNB1-203ENST00000460265 PGAP2Q9UHJ9 254 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 GGT7Q9UJ14 662 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 O00370 1275 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 CES2O00748 559 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 STAM2O75886 525 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 RPL7AP62424 266 aaKnown RBP16.28■□□□□ 0.2
LMNB1-203ENST00000460265 LAMTOR4Q0VGL1 99 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 Q3C1V9 767 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 ZACNQ401N2 412 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 RHOT1Q8IXI2 618 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 RASGEF1CQ8N431 466 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 C7orf31Q8N865 590 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 TMEM35BQ8NCS4 154 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 SLC10A4Q96EP9 437 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 CHMP6Q96FZ7 201 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 HEXIM2Q96MH2 286 aaKnown RBP16.28■□□□□ 0.2
LMNB1-203ENST00000460265 CCDC77Q9BR77 488 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 R3HDMLQ9H3Y0 253 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 PDGFCQ9NRA1 345 aa16.28■□□□□ 0.2
LMNB1-203ENST00000460265 CHCHD3Q9NX63 227 aaKnown RBP16.28■□□□□ 0.2
LMNB1-203ENST00000460265 ARFGEF1Q9Y6D6 1849 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 GRAP2O75791 330 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 POLE2P56282 527 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 USP4Q13107 963 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 C11orf63Q6NUN7 778 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 TRIM11Q96F44 468 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 OSBPL8Q9BZF1 889 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 TMEM59LQ9UK28 342 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 AFG3L2Q9Y4W6 797 aa16.27■□□□□ 0.2
LMNB1-203ENST00000460265 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.27■□□□□ 0.2
LMNB1-203ENST00000460265 B4GALT5O43286 388 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 PSMC4P43686 418 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 OAZ1P54368 228 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 IFI35P80217 286 aaPredicted RBP16.27■□□□□ 0.19
LMNB1-203ENST00000460265 ZNF667Q5HYK9 610 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 ELAC2Q9BQ52 826 aaKnown RBP16.27■□□□□ 0.19
LMNB1-203ENST00000460265 TRIM4Q9C037 500 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 ARHGAP28Q9P2N2 729 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 PCDHA3Q9Y5H8 950 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 CFAP73A6NFT4 308 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 FZD9O00144 591 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 KIAA0391O15091 583 aaKnown RBP16.27■□□□□ 0.19
LMNB1-203ENST00000460265 PDHA1P08559 390 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 CCND1P24385 295 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 PSMA2P25787 234 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 ROR2Q01974 943 aaKnown RBP16.27■□□□□ 0.19
LMNB1-203ENST00000460265 GCNT1Q02742 428 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 MAP3K10Q02779 954 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 LRRC23Q53EV4 343 aaPredicted RBP16.27■□□□□ 0.19
LMNB1-203ENST00000460265 TEKT4Q8WW24 435 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 C10orf88Q9H8K7 445 aa16.27■□□□□ 0.19
LMNB1-203ENST00000460265 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.27■□□□□ 0.192e-27■■■■□ 24.9
LMNB1-203ENST00000460265 PTPRJQ12913 1337 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ADCY3O60266 1144 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 KRT15P19012 456 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 PSMD6Q15008 389 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 TAS1R3Q7RTX0 852 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 EMC1Q8N766 993 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 HSPH1Q92598 858 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 DDX23Q9BUQ8 820 aaKnown RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 PABPC3Q9H361 631 aaKnown RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 CISHQ9NSE2 258 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 RPS6KL1Q9Y6S9 549 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 TOM1L1O75674 476 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 VTNP04004 478 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 CXCL8P10145 99 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 TBXAS1P24557 533 aaPredicted RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ITGA8P53708 1063 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ATP11AP98196 1134 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 RIPK1Q13546 671 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 TFDP1Q14186 410 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ANKRD20A2Q5SQ80 823 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ANKRD20A1Q5TYW2 823 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ANKRD20A3Q5VUR7 823 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 KLHL29Q96CT2 875 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 NTPCRQ9BSD7 190 aaKnown RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 MAK16Q9BXY0 300 aaKnown RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 ST6GALNAC4Q9H4F1 302 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 APOBEC3GQ9HC16 384 aaKnown RBP16.26■□□□□ 0.19
LMNB1-203ENST00000460265 SLC5A4Q9NY91 659 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 SLC12A6Q9UHW9 1150 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 C10orf71Q711Q0 1435 aa16.26■□□□□ 0.19
LMNB1-203ENST00000460265 FOXO6A8MYZ6 492 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 OSBPP22059 807 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 TNFRSF8P28908 595 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 BYSLQ13895 437 aaKnown RBP16.25■□□□□ 0.19
LMNB1-203ENST00000460265 ATF7IP2Q5U623 682 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 LMNTD2Q8IXW0 634 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 DNERQ8NFT8 737 aa16.25■□□□□ 0.19
LMNB1-203ENST00000460265 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms