RNA–Protein interactions for RNA: ENST00000453285.1

SDC4P-201, Transcript of syndecan 4 pseudogene, humanhuman

BASIC

Gene SDC4P, Length 601 nt, Biotype processed pseudogene, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P-201ENST00000453285 NOMO3P69849 1222 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 PTP4A2Q12974 167 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 GRIK3Q13003 919 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 TCEAL1Q15170 157 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 UPP1Q16831 310 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 CLEC16AQ2KHT3 1053 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 ZNF394Q53GI3 561 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 CLLU1OSQ5K130 101 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 ZNF569Q5MCW4 686 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 UBE2Q1Q7Z7E8 422 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 OSTM1Q86WC4 334 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 WDTC1Q8N5D0 677 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 RNF10Q8N5U6 811 aaKnown RBP6.4□□□□□ -1.38
SDC4P-201ENST00000453285 RNF169Q8NCN4 708 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 C3orf58Q8NDZ4 430 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 KBTBD7Q8WVZ9 684 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 SEPT8Q92599 483 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 APBB2Q92870 758 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 ARHGEF26Q96DR7 871 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 CYFIP2Q96F07 1278 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 TMEM176AQ96HP8 235 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 ZNF560Q96MR9 790 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 RPS6KC1Q96S38 1066 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 PAAF1Q9BRP4 392 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 PPP1R12CQ9BZL4 782 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 MCOLN1Q9GZU1 580 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 LUC7LQ9NQ29 371 aaKnown RBP6.4□□□□□ -1.38
SDC4P-201ENST00000453285 PRDM10Q9NQV6 1147 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 TMEM161AQ9NX61 479 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 DNAI1Q9UI46 699 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 BARX2Q9UMQ3 279 aaPredicted RBP6.4□□□□□ -1.38
SDC4P-201ENST00000453285 PCDHGC3Q9UN70 934 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 ATP11BQ9Y2G3 1177 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 R3HCC1Q9Y3T6 440 aaKnown RBP6.4□□□□□ -1.38
SDC4P-201ENST00000453285 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.4□□□□□ -1.38
SDC4P-201ENST00000453285 SNX9Q9Y5X1 595 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 CAPN6Q9Y6Q1 641 aa6.4□□□□□ -1.38
SDC4P-201ENST00000453285 NCANO14594 1321 aa6.4□□□□□ -1.39
SDC4P-201ENST00000453285 GBF1Q92538 1859 aa6.4□□□□□ -1.39
SDC4P-201ENST00000453285 FAM170AA1A519 330 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 MACROD2A1Z1Q3 448 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TRIM43BA6NCK2 446 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CASTOR2A6NHX0 329 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 PODXLO00592 558 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 GABRDO14764 452 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 KIAA0355O15063 1070 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 HCRTO43612 131 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 BUB1O43683 1085 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 KIF5CO60282 957 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CLSTN1O94985 981 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CLTBP09497 229 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 VDRP11473 427 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 WARSP23381 471 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CASQ1P31415 396 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 SSTR3P32745 418 aaPredicted RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 HADHBP55084 474 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CENPCQ03188 943 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 DSC1Q08554 894 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 ORC1Q13415 861 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TUSC3Q13454 348 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CNGA2Q16280 664 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 SV2CQ496J9 727 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 NOMO2Q5JPE7 1267 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 DNTTIP2Q5QJE6 756 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 DENND1BQ6P3S1 775 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TRIM72Q6ZMU5 477 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 DPH6Q7L8W6 267 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 NECAB2Q7Z6G3 386 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 UNC93AQ86WB7 457 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 ZNF280BQ86YH2 543 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 PHF13Q86YI8 300 aaPredicted RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 COLGALT2Q8IYK4 626 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 MCOLN2Q8IZK6 566 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CRYBG2Q8N1P7 616 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TXLNBQ8N3L3 684 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TTC39CQ8N584 583 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TOP6BLQ8N6T0 577 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 KIF18AQ8NI77 898 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 RABGGTAQ92696 567 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 SECISBP2LQ93073 1101 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TRIM43Q96BQ3 446 aaPredicted RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 DDX27Q96GQ7 796 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 SENP8Q96LD8 212 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 CASD1Q96PB1 797 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 MMS19Q96T76 1030 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TMEM106CQ9BVX2 250 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 THAP2Q9H0W7 228 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 LHX5Q9H2C1 402 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 TMEM39AQ9NV64 488 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 SEPT11Q9NVA2 429 aaKnown RBP6.39□□□□□ -1.39
SDC4P-201ENST00000453285 KIAA1257Q9ULG3 409 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 L1RE1Q9UN81 338 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 COG5Q9UP83 839 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 PCDHGC5Q9Y5F6 944 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 MYO16Q9Y6X6 1858 aa6.39□□□□□ -1.39
SDC4P-201ENST00000453285 MTCL1Q9Y4B5 1905 aaKnown RBP6.38□□□□□ -1.39
SDC4P-201ENST00000453285 TCRBV5S1A1TA0A578 114 aa6.38□□□□□ -1.39
SDC4P-201ENST00000453285 GRID2IPA4D2P6 1211 aa6.38□□□□□ -1.39
SDC4P-201ENST00000453285 O00370 1275 aa6.38□□□□□ -1.39
SDC4P-201ENST00000453285 CYB561D2O14569 222 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms