RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ZNF707Q96C28 371 aaPredicted RBP17.59■□□□□ 0.41
SF3A1-204ENST00000447376 DHTKD1Q96HY7 919 aaPredicted RBP17.59■□□□□ 0.41
SF3A1-204ENST00000447376 MMS19Q96T76 1030 aa17.59■□□□□ 0.41
SF3A1-204ENST00000447376 C1QTNF1Q9BXJ1 281 aa17.59■□□□□ 0.41
SF3A1-204ENST00000447376 GDAP2Q9NXN4 497 aa17.59■□□□□ 0.41
SF3A1-204ENST00000447376 INSL5Q9Y5Q6 135 aa17.59■□□□□ 0.41
SF3A1-204ENST00000447376 CUL9Q8IWT3 2517 aa17.58■□□□□ 0.41
SF3A1-204ENST00000447376 TTC28Q96AY4 2481 aa17.58■□□□□ 0.41
SF3A1-204ENST00000447376 PTPRJQ12913 1337 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 EPB41P11171 864 aaKnown RBP17.58■□□□□ 0.4
SF3A1-204ENST00000447376 PCSK1P29120 753 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 ATICP31939 592 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 ALDH1A3P47895 512 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 SLC39A12Q504Y0 691 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 RNF19BQ6ZMZ0 732 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 GRASPQ7Z6J2 395 aaPredicted RBP17.58■□□□□ 0.4
SF3A1-204ENST00000447376 ADGRF2Q8IZF7 708 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 ADSSL1Q8N142 457 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 C2orf15Q8WU43 125 aaKnown RBP17.58■□□□□ 0.4
SF3A1-204ENST00000447376 ZNF512Q96ME7 567 aaPredicted RBP17.58■□□□□ 0.4
SF3A1-204ENST00000447376 IMPG2Q9BZV3 1241 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 CD320Q9NPF0 282 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 SIX4Q9UIU6 781 aa17.58■□□□□ 0.4
SF3A1-204ENST00000447376 SCN1AP35498 2009 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 BICDL2A1A5D9 508 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 LRRIQ3A6PVS8 624 aaPredicted RBP17.57■□□□□ 0.4
SF3A1-204ENST00000447376 C2CD4DB7Z1M9 353 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 IKBKBO14920 756 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 STX10O60499 249 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 PAPLNO95428 1278 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 OR4Q2P0C623 313 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 P4HA1P13674 534 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 PTPN2P17706 415 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 FSHRP23945 695 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 VAMP7P51809 220 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 LRRC63Q05C16 580 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 PABPC1LQ4VXU2 614 aaKnown RBP17.57■□□□□ 0.4
SF3A1-204ENST00000447376 GET4Q7L5D6 327 aaPredicted RBP17.57■□□□□ 0.4
SF3A1-204ENST00000447376 ZDHHC14Q8IZN3 488 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 PDCL2Q8N4E4 241 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 CCDC150Q8NCX0 1101 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 PGLYRP2Q96PD5 576 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 L1RE1Q9UN81 338 aa17.57■□□□□ 0.4
SF3A1-204ENST00000447376 ZFP37Q9Y6Q3 630 aaPredicted RBP17.57■□□□□ 0.4
SF3A1-204ENST00000447376 TRIM21P19474 475 aaKnown RBP17.56■□□□□ 0.4
SF3A1-204ENST00000447376 TUFMP49411 452 aaKnown RBP17.56■□□□□ 0.4
SF3A1-204ENST00000447376 CASP4P49662 377 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 EPHB3P54753 998 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 FKBP3Q00688 224 aaKnown RBP17.56■□□□□ 0.4
SF3A1-204ENST00000447376 ENPEPQ07075 957 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 VEPH1Q14D04 833 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 NFE2Q16621 373 aaPredicted RBP17.56■□□□□ 0.4
SF3A1-204ENST00000447376 ZNF699Q32M78 642 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 WDR72Q3MJ13 1102 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 CYP4A22Q5TCH4 519 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 CENPPQ6IPU0 288 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 MLKLQ8NB16 471 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 CXorf38Q8TB03 319 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 SPPL2BQ8TCT7 592 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 BORCS6Q96GS4 357 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 FAM84AQ96KN4 292 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 ACBD6Q9BR61 282 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 MKNK1Q9BUB5 465 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 ZCWPW1Q9H0M4 648 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 SNX25Q9H3E2 840 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 DDX43Q9NXZ2 648 aaKnown RBP17.56■□□□□ 0.4
SF3A1-204ENST00000447376 HSFX1Q9UBD0 423 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 NCOR1O75376 2440 aa17.56■□□□□ 0.4
SF3A1-204ENST00000447376 MTMR11A4FU01 709 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 PI4K2BG5E9Z4 385 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 ZNF197O14709 1029 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 SEC24AO95486 1093 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 CCNE1P24864 410 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 TWF1Q12792 350 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 DUSP4Q13115 394 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 NCOA4Q13772 614 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 MAPRE1Q15691 268 aaKnown RBP17.55■□□□□ 0.4
SF3A1-204ENST00000447376 TAF12Q16514 161 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 MGAT5BQ3V5L5 792 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 ZCWPW2Q504Y3 356 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 ZNF667Q5HYK9 610 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 CCDC183Q5T5S1 534 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 KLHL10Q6JEL2 608 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 PDZD4Q76G19 769 aaPredicted RBP17.55■□□□□ 0.4
SF3A1-204ENST00000447376 ITIH5Q86UX2 942 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 LEMD2Q8NC56 503 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 FAM200AQ8TCP9 573 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 SEPT5Q99719 369 aaPredicted RBP17.55■□□□□ 0.4
SF3A1-204ENST00000447376 CORO1BQ9BR76 489 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 DACH1Q9UI36 760 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 MUTYHQ9UIF7 546 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 YIPF1Q9Y548 306 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 PCDHB5Q9Y5E4 795 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 TSC2P49815 1807 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 C2orf16Q68DN1 1984 aa17.55■□□□□ 0.4
SF3A1-204ENST00000447376 BDP1A6H8Y1 2624 aa17.54■□□□□ 0.4
SF3A1-204ENST00000447376 PPP1R3GB7ZBB8 358 aa17.54■□□□□ 0.4
SF3A1-204ENST00000447376 SLC16A3O15427 465 aaKnown RBP17.54■□□□□ 0.4
SF3A1-204ENST00000447376 AKAP3O75969 853 aa17.54■□□□□ 0.4
SF3A1-204ENST00000447376 STAU1O95793 577 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms