RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 AGAP1Q9UPQ3 857 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 RIF1Q5UIP0 2472 aaKnown RBP22.4■■□□□ 1.18
SDC1-205ENST00000447124 CACNA1IQ9P0X4 2223 aa22.39■■□□□ 1.18
SDC1-205ENST00000447124 SHISA7A6NL88 538 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 POLR2DO15514 142 aaKnown RBP22.39■■□□□ 1.17
SDC1-205ENST00000447124 HSP90AA1P07900 732 aaKnown RBP22.39■■□□□ 1.17
SDC1-205ENST00000447124 PDIA4P13667 645 aaKnown RBP22.39■■□□□ 1.17
SDC1-205ENST00000447124 NBL1P41271 181 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 VIPR2P41587 438 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 ALDH1A3P47895 512 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 EPHB3P54753 998 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 EPM2AIP1Q7L775 607 aaPredicted RBP22.39■■□□□ 1.17
SDC1-205ENST00000447124 METTL23Q86XA0 190 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 LEMD2Q8NC56 503 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 ZNF507Q8TCN5 953 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 SHDQ96IW2 340 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 ZNF334Q9HCZ1 680 aaPredicted RBP22.39■■□□□ 1.17
SDC1-205ENST00000447124 USP34Q70CQ2 3546 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 F5P12259 2224 aa22.39■■□□□ 1.17
SDC1-205ENST00000447124 KANSL1LA0AUZ9 987 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 ITGB3P05106 788 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 CD72P21854 359 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 POLR2BP30876 1174 aaKnown RBP22.38■■□□□ 1.17
SDC1-205ENST00000447124 ASIC1P78348 528 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 AMPD3Q01432 767 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 PFKPQ01813 784 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 PRKCQQ04759 706 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 DNM1Q05193 864 aaKnown RBP22.38■■□□□ 1.17
SDC1-205ENST00000447124 PLD1Q13393 1074 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 GRM2Q14416 872 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 GPD1LQ8N335 351 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 PJA1Q8NG27 643 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 NOC3LQ8WTT2 800 aaKnown RBP22.38■■□□□ 1.17
SDC1-205ENST00000447124 CACTINQ8WUQ7 758 aaKnown RBP22.38■■□□□ 1.17
SDC1-205ENST00000447124 SMARCD2Q92925 531 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 TMLHEQ9NVH6 421 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 HSFX1Q9UBD0 423 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 SIX4Q9UIU6 781 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 RCOR1Q9UKL0 485 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 GTF3C3Q9Y5Q9 886 aa22.38■■□□□ 1.17
SDC1-205ENST00000447124 NCANO14594 1321 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 A0A1W2PRU2 124 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 EHHADHQ08426 723 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 SV2CQ496J9 727 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 LMBRD2Q68DH5 695 aaPredicted RBP22.37■■□□□ 1.17
SDC1-205ENST00000447124 VITQ6UXI7 678 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 GAREM2Q75VX8 874 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 ASCL5Q7RTU5 278 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 FRMD5Q7Z6J6 570 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 CBWD2Q8IUF1 395 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 GPIHBP1Q8IV16 184 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 THEM5Q8N1Q8 247 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 CSGALNACT2Q8N6G5 542 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 ZSCAN18Q8TBC5 510 aaPredicted RBP22.37■■□□□ 1.17
SDC1-205ENST00000447124 KCNG4Q8TDN1 519 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 PSMG2Q969U7 264 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 RSPRY1Q96DX4 576 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 LPIN3Q9BQK8 851 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 BLZF1Q9H2G9 400 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 TRPV4Q9HBA0 871 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 ASB3Q9Y575 518 aa22.37■■□□□ 1.17
SDC1-205ENST00000447124 FAM170BA6NMN3 283 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 TGFB1I1O43294 461 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 GFRA3O60609 400 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 ME1P48163 572 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 STXBP5Q5T5C0 1151 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 RESP18Q5W5W9 173 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 PDCL2Q8N4E4 241 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 OR5B17Q8NGF7 314 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 ZNF560Q96MR9 790 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 MKNK1Q9BUB5 465 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 HEBP1Q9NRV9 189 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 L1RE1Q9UN81 338 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 DMDP11532 3685 aa22.36■■□□□ 1.17
SDC1-205ENST00000447124 PTPRJQ12913 1337 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 KIAA0391O15091 583 aaKnown RBP22.35■■□□□ 1.17
SDC1-205ENST00000447124 HAPLN1P10915 354 aaPredicted RBP22.35■■□□□ 1.17
SDC1-205ENST00000447124 ATF6P18850 670 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 PNPLA4P41247 253 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 TUFMP49411 452 aaKnown RBP22.35■■□□□ 1.17
SDC1-205ENST00000447124 MGAT5BQ3V5L5 792 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 FAM26FQ5R3K3 315 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 ATL3Q6DD88 541 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 STXBP4Q6ZWJ1 553 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 UNC13DQ70J99 1090 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 OSTM1Q86WC4 334 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 SCFD1Q8WVM8 642 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 CHAMP1Q96JM3 812 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 SEPT5Q99719 369 aaPredicted RBP22.35■■□□□ 1.17
SDC1-205ENST00000447124 TRMT61BQ9BVS5 477 aaKnown RBP22.35■■□□□ 1.17
SDC1-205ENST00000447124 LTB4R2Q9NPC1 389 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 INTS13Q9NVM9 706 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 HSPBP1Q9NZL4 362 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 ZDHHC9Q9Y397 364 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 MYO15AQ9UKN7 3530 aa22.35■■□□□ 1.17
SDC1-205ENST00000447124 TSC2P49815 1807 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 ZNF233A6NK53 670 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 EIF3DO15371 548 aaKnown RBP eCLIP22.34■■□□□ 1.174e-8■■■□□ 16.7
SDC1-205ENST00000447124 RBP5P82980 135 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 FZD5Q13467 585 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms