RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 MRE11P49959 708 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 POLR2FP61218 127 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 DSG1Q02413 1049 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 MRPL58Q14197 206 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 ARHGAP44Q17R89 818 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 RTP2Q5QGT7 225 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 VARS2Q5ST30 1063 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 KIAA0319Q5VV43 1072 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 SMYD5Q6GMV2 418 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 IQCEQ6IPM2 695 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 PDE12Q6L8Q7 609 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 VSTM4Q8IW00 320 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 OR6B3Q8NGW1 331 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 KBTBD7Q8WVZ9 684 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 RIN2Q8WYP3 895 aaPredicted RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 PIK3R5Q8WYR1 880 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 KAT5Q92993 513 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 IQCDQ96DY2 449 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 B3GALT6Q96L58 329 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 KREMEN1Q96MU8 473 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 ARID3AQ99856 593 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 MRPL45Q9BRJ2 306 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 OXCT2Q9BYC2 517 aaPredicted RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 EDEM3Q9BZQ6 932 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 DNAI2Q9GZS0 605 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 LMAN2LQ9H0V9 348 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 ZBP1Q9H171 429 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 TLR9Q9NR96 1032 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 MRPL17Q9NRX2 175 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 CISHQ9NSE2 258 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.87■□□□□ 0.29
USP40-206ENST00000443711 FHOD1Q9Y613 1164 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 ITIH6Q6UXX5 1313 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 TSC2P49815 1807 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 A8MXQ7 604 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 CXCL14O95715 111 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 CD58P19256 250 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 DNAJB1P25685 340 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 CREMQ03060 361 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 INCA1Q0VD86 236 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 RAPGEF1Q13905 1077 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 FIGNQ5HY92 759 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 SPECC1LQ69YQ0 1117 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 ZNF280DQ6N043 979 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 CACNA2D4Q7Z3S7 1137 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 UNC93AQ86WB7 457 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 LNX1Q8TBB1 728 aaPredicted RBP16.86■□□□□ 0.29
USP40-206ENST00000443711 NAA15Q9BXJ9 866 aaKnown RBP16.86■□□□□ 0.29
USP40-206ENST00000443711 STK33Q9BYT3 514 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 NGRNQ9NPE2 291 aaKnown RBP16.86■□□□□ 0.29
USP40-206ENST00000443711 NLRC4Q9NPP4 1024 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 ENTPD7Q9NQZ7 604 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 DDX43Q9NXZ2 648 aaKnown RBP16.86■□□□□ 0.29
USP40-206ENST00000443711 CEP72Q9P209 647 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 BARX2Q9UMQ3 279 aaPredicted RBP16.86■□□□□ 0.29
USP40-206ENST00000443711 PCDHB4Q9Y5E5 795 aa16.86■□□□□ 0.29
USP40-206ENST00000443711 RANBP2P49792 3224 aaKnown RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 OR6C75A6NL08 312 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 SOX1O00570 391 aaPredicted RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 C2CD2LO14523 706 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 EPHB6O15197 1021 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 LPXNO60711 386 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 CILPO75339 1184 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 ADCY5O95622 1261 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 PDGFRBP09619 1106 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 ACO1P21399 889 aaKnown RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 PCSK1P29120 753 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 NDST1P52848 882 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 ERVFC1P60507 584 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 SMC1AQ14683 1233 aaKnown RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 DRAP1Q14919 205 aaPredicted RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 PSMD5Q16401 504 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 CTXN3Q4LDR2 81 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 PRSS55Q6UWB4 352 aaPredicted RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 OSTM1Q86WC4 334 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 UBR7Q8N806 425 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 MICAL1Q8TDZ2 1067 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 SPAG5Q96R06 1193 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 TCF25Q9BQ70 676 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 ACBD6Q9BR61 282 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.85■□□□□ 0.29
USP40-206ENST00000443711 AJAP1Q9UKB5 411 aaPredicted RBP16.85■□□□□ 0.29
USP40-206ENST00000443711 STXBP5LQ9Y2K9 1186 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 BACE2Q9Y5Z0 518 aa16.85■□□□□ 0.29
USP40-206ENST00000443711 EPOPA6NHQ4 379 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 FSCN2O14926 492 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 LILRB3O75022 631 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 CA8P35219 290 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 TRIM14Q14142 442 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 PTPN14Q15678 1187 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 PTPROQ16827 1216 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 PPFIBP1Q86W92 1011 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 GDPD5Q8WTR4 605 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 SHC3Q92529 594 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 RTP3Q9BQQ7 232 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 NT5C1AQ9BXI3 368 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 FNIP2Q9P278 1114 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 MTRRQ9UBK8 725 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 CDH9Q9ULB4 789 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 CNTN6Q9UQ52 1028 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms