RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 FRS3O43559 492 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 DNAJB5O75953 348 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 FSHBP01225 129 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 FDXRP22570 491 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 ARFIP2P53365 341 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 RPS7P62081 194 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 LLGL1Q15334 1064 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 CNN3Q15417 329 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 Q6ZPA2 131 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 ZNF627Q7L945 461 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 DGKHQ86XP1 1220 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 SLC16A11Q8NCK7 471 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 NSUN7Q8NE18 718 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 KBTBD7Q8WVZ9 684 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 NEU4Q8WWR8 484 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 ASB10Q8WXI3 467 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 CHMP4AQ9BY43 222 aa7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 COL4A3Q01955 1670 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 SPATA31A3Q5VYP0 1347 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 TPP1O14773 563 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 KIF3BO15066 747 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 SOAT2O75908 522 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 KIF20AO95235 890 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 THP07101 528 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 PIM1P11309 404 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 NPR1P16066 1061 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 KCNJ5P48544 419 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 CACNB3P54284 484 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 HLXQ14774 488 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 FAM160B1Q5W0V3 765 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 IL31RAQ8NI17 732 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 ANKS1AQ92625 1134 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 TRIM54Q9BYV2 358 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 C22orf23Q9BZE7 217 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 SCAND2PQ9GZW5 306 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 TBCCD1Q9NVR7 557 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 MRPS18AQ9NVS2 196 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 PLEKHM1Q9Y4G2 1056 aa7.09□□□□□ -1.27
CCDC88A-206ENST00000430086 TMEM191CA6NGB0 347 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 M0QYG6 137 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 TGM1P22735 817 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 MC2RQ01718 297 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 FPGSQ05932 587 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 GALEQ14376 348 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 MICALCLQ6ZW33 695 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 COL23A1Q86Y22 540 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 VRK3Q8IV63 474 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 FAM156AQ8NDB6 213 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 COQ10AQ96MF6 247 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 DPH1Q9BZG8 443 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 PCED1AQ9H1Q7 454 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 INTS13Q9NVM9 706 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 GEMIN8Q9NWZ8 242 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 SYBUQ9NX95 663 aa7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.08□□□□□ -1.28
CCDC88A-206ENST00000430086 TRGV11A0A075B6L2 103 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 GRID2IPA4D2P6 1211 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 MYO1FO00160 1098 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 TOR1BO14657 336 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 MARCH6O60337 910 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 UNC5CO95185 931 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 KITP10721 976 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 ITGAMP11215 1152 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 KRT4P19013 534 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 TOB1P50616 345 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 FAM193AP78312 1265 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 KLF10Q13118 480 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 AMOTQ4VCS5 1084 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 TAF2Q6P1X5 1199 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 DARS2Q6PI48 645 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 APOA5Q6Q788 366 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 Q6YL49 198 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 ADGRG5Q8IZF4 528 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 LCORLQ8N3X6 602 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 LNX2Q8N448 690 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 PSD4Q8NDX1 1056 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 LINC00476Q8WZB0 136 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 TMEM125Q96AQ2 219 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 P2RX7Q99572 595 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 HEPHQ9BQS7 1158 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 TMPRSS5Q9H3S3 457 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 SRRDQ9UH36 339 aa7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.07□□□□□ -1.28
CCDC88A-206ENST00000430086 CFAP69A5D8W1 941 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 AKAP8O43823 692 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 HKR1P10072 659 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 SRGNP10124 158 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 RHCEP18577 417 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 EN2P19622 333 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 AVPR1BP47901 424 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 RHDQ02161 417 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 FHL2Q14192 279 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 HLTFQ14527 1009 aaKnown RBP eCLIP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 CD300EQ496F6 205 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 HSP90AB2PQ58FF8 381 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 RNF220Q5VTB9 566 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 SLC30A10Q6XR72 485 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 CCDC149Q6ZUS6 474 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 LDLRAD3Q86YD5 345 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms