RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PROSCO94903 275 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 VNN1O95497 513 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 CYP1A1P04798 512 aaPredicted RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 THP07101 528 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 TMEM62Q0P6H9 643 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 SEZ6Q53EL9 994 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 LRRC38Q5VT99 294 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 NT5DC3Q86UY8 548 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 CCDC105Q8IYK2 499 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 ZNF516Q92618 1163 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PRDM16Q9HAZ2 1276 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 STARD7Q9NQZ5 370 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 NOC2LQ9Y3T9 749 aaKnown RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 RCCD1A6NED2 376 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 RECQL4O94761 1208 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 NFICP08651 508 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PNMA6AP0CW24 399 aaPredicted RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 KRT3P12035 628 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PSMA2P25787 234 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 GLB1LQ6UWU2 654 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 KLHL7Q8IXQ5 586 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 TOP6BLQ8N6T0 577 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 RNPC3Q96LT9 517 aaKnown RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 MED4Q9NPJ6 270 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 CNTN3Q9P232 1028 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 USTQ9Y2C2 406 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 FAM155AB1AL88 458 aaPredicted RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 TRPA1O75762 1119 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 FGGP02679 453 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 WEE2P0C1S8 567 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 KCNE1P15382 129 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 GNL1P36915 607 aaPredicted RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 CXCL17Q6UXB2 119 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 MMS22LQ6ZRQ5 1243 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PDZD4Q76G19 769 aaPredicted RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 CNPY4Q8N129 248 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 KRT12Q99456 494 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 LRRC4Q9HBW1 653 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 ODC1P11926 461 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 COL6A1P12109 1028 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 BCAT1P54687 386 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 NKX3-2P78367 333 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 TSPY1Q01534 308 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 TFDP2Q14188 446 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 OR6B2Q6IFH4 312 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 CPA5Q8WXQ8 436 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 MAGOHBQ96A72 148 aaKnown RBP8.88□□□□□ -0.99
USP54-203ENST00000418501 HES6Q96HZ4 224 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 CCDC77Q9BR77 488 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 BCO2Q9BYV7 579 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 VIPAS39Q9H9C1 493 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 TELO2Q9Y4R8 837 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 SMCHD1A6NHR9 2005 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 TREHO43280 583 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 SRGAP2O75044 1071 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 HEXIM1O94992 359 aaKnown RBP8.88□□□□□ -0.99
USP54-203ENST00000418501 COMTP21964 271 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 NOMO3P69849 1222 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 C2orf54Q08AI8 447 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 PTP4A2Q12974 167 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 SLC10A6Q3KNW5 377 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 SPOPLQ6IQ16 392 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 SND1Q7KZF4 910 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP54-203ENST00000418501 BZW1Q7L1Q6 419 aaKnown RBP8.88□□□□□ -0.99
USP54-203ENST00000418501 GSTA5Q7RTV2 222 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 C3orf20Q8ND61 904 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 KAT5Q92993 513 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 CYFIP2Q96F07 1278 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 RAB21Q9UL25 225 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 PCDHA3Q9Y5H8 950 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 NCK2O43639 380 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 GPR32O75388 356 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 ECEL1O95672 775 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 KRT1P04264 644 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 MYZAPP0CAP1 466 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 FNTAP49354 379 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 ZNF394Q53GI3 561 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 ALS2CLQ60I27 953 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 KAT2BQ92831 832 aa8.88□□□□□ -0.99
USP54-203ENST00000418501 PRPSAP2O60256 369 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 PHF2O75151 1096 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 FBXO21O94952 628 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 ASGR1P07306 291 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 BRD2P25440 801 aaKnown RBP8.87□□□□□ -0.99
USP54-203ENST00000418501 CXCR5P32302 372 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 CLCN6P51797 869 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 DR1Q01658 176 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 ITGA7Q13683 1181 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 KCNA10Q16322 511 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 AMHR2Q16671 573 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 EFHC1Q5JVL4 640 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 DPY19L2P1Q6NXN4 242 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 CREG2Q8IUH2 290 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 PASD1Q8IV76 773 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 SIX6OS1Q8N1H7 587 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 C1orf127Q8N9H9 656 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 LRRC57Q8N9N7 239 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 GPR88Q9GZN0 384 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 STAP1Q9ULZ2 295 aa8.87□□□□□ -0.99
USP54-203ENST00000418501 KIAA1217Q5T5P2 1943 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms