RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 PPP2R3CQ969Q6 453 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 MTMR4Q9NYA4 1195 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 GTPBP10A4D1E9 387 aaKnown RBP15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 SLC16A3O15427 465 aaKnown RBP15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 SHMT1P34896 483 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 GALK1P51570 392 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZFYVE27Q5T4F4 411 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 MAP7D3Q8IWC1 876 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 CDAN1Q8IWY9 1227 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 SMC1BQ8NDV3 1235 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 KAT5Q92993 513 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 PCDHB18PQ96TA0 734 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 HSFX1Q9UBD0 423 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 FRMPD4Q14CM0 1322 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 SCN9AQ15858 1988 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 MAGEB3O15480 346 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 PRPF4O43172 522 aaKnown RBP eCLIP15.5■□□□□ 0.071e-7■■■■□ 26.7
NCKIPSD-204ENST00000416649 SGPL1O95470 568 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 HLA-DOAP06340 250 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 GCAP28676 217 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 MYCT1Q8N699 235 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 STKLD1Q8NE28 680 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 HIPK4Q8NE63 616 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 CCDC110Q8TBZ0 833 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 GRK7Q8WTQ7 553 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 CD101Q93033 1021 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 PHF12Q96QT6 1004 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 SH2D3AQ9BRG2 576 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 TSSK1BQ9BXA7 367 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 OSBPL8Q9BZF1 889 aa15.5■□□□□ 0.07
NCKIPSD-204ENST00000416649 GOLGA8SH3BPF8 625 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 GOLGA8MH3BSY2 632 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 TGFB1I1O43294 461 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 BCRP11274 1271 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 CAV1Q03135 178 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 C12orf50Q8NA57 414 aaPredicted RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 CYLDQ9NQC7 956 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 DDX43Q9NXZ2 648 aaKnown RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 EURLQ9NYK6 297 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 FAM198AQ9UFP1 575 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 FRMD4BQ9Y2L6 1034 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ESYT2A0FGR8 921 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 FCHO1O14526 889 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZBTB39O15060 712 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 SORBS3O60504 671 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZNF189O75820 626 aaPredicted RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 BAG6P46379 1132 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 NOP14P78316 857 aaKnown RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 IKQ13123 557 aaPredicted RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 LPCAT4Q643R3 524 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 RGS9BPQ6ZS82 235 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 SH3BP5LQ7L8J4 393 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ALYREFQ86V81 257 aaKnown RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ANKMY2Q8IV38 441 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ARHGEF19Q8IW93 802 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 SCUBE1Q8IWY4 988 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 RNF168Q8IYW5 571 aaPredicted RBP15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZBED8Q8IZ13 594 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 PYDC1Q8WXC3 89 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 TUBB6Q9BUF5 446 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 DCLK3Q9C098 648 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 NMUR2Q9GZQ4 415 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 MANSC1Q9H8J5 431 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 SLC17A7Q9P2U7 560 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZNF711Q9Y462 761 aa15.49■□□□□ 0.07
NCKIPSD-204ENST00000416649 FSCN2O14926 492 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 BANF1O75531 89 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 MYL2P10916 166 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 TTLL6Q8N841 843 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 TCP10LQ8TDR4 215 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 PANX3Q96QZ0 392 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 NEU2Q9Y3R4 380 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 NAV1Q8NEY1 1877 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 A0A0J9YVX5 310 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 A8MXQ7 604 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZNF862O60290 1169 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 FAM13AO94988 1023 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 PABPC4LP0CB38 370 aaKnown RBP15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 RARBP10826 455 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 FUT4P22083 530 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 POLD1P28340 1107 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 UBXN2AP68543 259 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 LMNB2Q03252 620 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 KIF22Q14807 665 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 RASA2Q15283 850 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZYXQ15942 572 aaKnown RBP15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 C2CD6Q53TS8 623 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 PRR16Q569H4 304 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 STRIP1Q5VSL9 837 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 STYK1Q6J9G0 422 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 TAB3Q8N5C8 712 aaPredicted RBP15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 JDP2Q8WYK2 163 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 TTC17Q96AE7 1141 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 TTC25Q96NG3 672 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 IL1RAPL1Q9NZN1 696 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 ANAPC7Q9UJX3 599 aa15.48■□□□□ 0.07
NCKIPSD-204ENST00000416649 ARHGAP42A6NI28 874 aa15.47■□□□□ 0.07
NCKIPSD-204ENST00000416649 ZSCAN5DPP0CG00 497 aa15.47■□□□□ 0.07
NCKIPSD-204ENST00000416649 ADARP55265 1226 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms