RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LPAL2Q16609 132 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 WDR44Q5JSH3 913 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 GPR158Q5T848 1215 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 MFSD6LQ8IWD5 586 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 CD302Q8IX05 232 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 YAF2Q8IY57 180 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 ATRIPQ8WXE1 791 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 RUBCNQ92622 972 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 NELL2Q99435 816 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 FAM213AQ9BRX8 229 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 ZCWPW1Q9H0M4 648 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 TRPV4Q9HBA0 871 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 MRPS17Q9Y2R5 130 aaKnown RBP12.52□□□□□ -0.41
USP4-204ENST00000416417 ZNF292O60281 2723 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 TSC2P49815 1807 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ARNTLO00327 626 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 PRAMEF12O95522 483 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ANK1P16157 1881 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ATF6P18850 670 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 RPS9P46781 194 aaKnown RBP12.51□□□□□ -0.41
USP4-204ENST00000416417 GPR15P49685 360 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 PLD1Q13393 1074 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 GAS6Q14393 721 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 CCDC142Q17RM4 750 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ZNF528Q3MIS6 628 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 SDHAF4Q5VUM1 108 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 RRAGBQ5VZM2 374 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 TXNDC11Q6PKC3 985 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 LEMD2Q8NC56 503 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 DEPDC1BQ8WUY9 529 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 PSMG2Q969U7 264 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 DNAJC19Q96DA6 116 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 BORCS6Q96GS4 357 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 PCIF1Q9H4Z3 704 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 MRPL44Q9H9J2 332 aaKnown RBP12.51□□□□□ -0.41
USP4-204ENST00000416417 PRMT8Q9NR22 394 aaPredicted RBP12.51□□□□□ -0.41
USP4-204ENST00000416417 TMLHEQ9NVH6 421 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ZSCAN32Q9NX65 697 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 ABI2Q9NYB9 513 aaPredicted RBP12.51□□□□□ -0.41
USP4-204ENST00000416417 NCDNQ9UBB6 729 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 DERAQ9Y315 318 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 SRPRBQ9Y5M8 271 aaKnown RBP12.51□□□□□ -0.41
USP4-204ENST00000416417 STYXL1Q9Y6J8 313 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 GVINP1Q7Z2Y8 2422 aa12.51□□□□□ -0.41
USP4-204ENST00000416417 MAN2B1O00754 1011 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 HCRTO43612 131 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 PPP1R37O75864 691 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 GCNT3O95395 438 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 CYP11A1P05108 521 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 IDEP14735 1019 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 SYT1P21579 422 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 TAF6P49848 677 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 KPNA1P52294 538 aaPredicted RBP12.5□□□□□ -0.41
USP4-204ENST00000416417 TFAMQ00059 246 aaKnown RBP12.5□□□□□ -0.41
USP4-204ENST00000416417 SATB1Q01826 763 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 TNK2Q07912 1038 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 DMWDQ09019 674 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 SLFN12LQ6IEE8 588 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 Q6ZS52 159 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 METTL23Q86XA0 190 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 ZBTB44Q8NCP5 570 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 CSGALNACT1Q8TDX6 532 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 STRA6Q9BX79 667 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 OXCT2Q9BYC2 517 aaPredicted RBP12.5□□□□□ -0.41
USP4-204ENST00000416417 CHRDQ9H2X0 955 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 ST6GALNAC4Q9H4F1 302 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 ASB7Q9H672 318 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 IL21Q9HBE4 155 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 C2orf42Q9NWW7 574 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 GTSE1Q9NYZ3 720 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 CCDC39Q9UFE4 941 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 C2CD2Q9Y426 696 aa12.5□□□□□ -0.41
USP4-204ENST00000416417 DPYSL4O14531 572 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 CHRNB1P11230 501 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 TDGF1P13385 188 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 ACAT1P24752 427 aaKnown RBP12.49□□□□□ -0.41
USP4-204ENST00000416417 POLR2BP30876 1174 aaKnown RBP12.49□□□□□ -0.41
USP4-204ENST00000416417 MAGEA9P43362 315 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 L1TD1Q5T7N2 865 aaKnown RBP12.49□□□□□ -0.41
USP4-204ENST00000416417 LMBRD2Q68DH5 695 aaPredicted RBP12.49□□□□□ -0.41
USP4-204ENST00000416417 SV2BQ7L1I2 683 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 PDILTQ8N807 584 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 GLIS3Q8NEA6 775 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 HPS3Q969F9 1004 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 ACCSQ96QU6 501 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 USP28Q96RU2 1077 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 TSPAN18Q96SJ8 248 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 PI4K2AQ9BTU6 479 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 GPR88Q9GZN0 384 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 STK17AQ9UEE5 414 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 AGAP1Q9UPQ3 857 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 SMG5Q9UPR3 1016 aaKnown RBP12.49□□□□□ -0.41
USP4-204ENST00000416417 PCDHGA2Q9Y5H1 932 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 SCN1AP35498 2009 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 FANCMQ8IYD8 2048 aa12.49□□□□□ -0.41
USP4-204ENST00000416417 EP300Q09472 2414 aaPredicted RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 MED19A0JLT2 244 aaPredicted RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 KPNA7A9QM74 516 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 CHADO15335 359 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 LILRB5O75023 590 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms